RNA id: AMCG00008867


Basic Information

Item Value
RNA id AMCG00008867
length 4752
RNA type mRNA
GC content 0.50
exon number 13
gene id AMCG00008867
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13517663 ~ 13534601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGATGAGGGCCAATATAACAGCCTTCCCAGTGGCACAGGAATGCTGGTGTCAAGAGAGTCATACTCGGTGGCGGGCAGTGAGGGGAGTCTCTCTGCATCGGCGGCCTCAGTGCAGCCCCAGGCGTCCGGCAGCTCCCCCCCACCTTCTCCCAGCACACGTCGCTCTGTCAGCACCCTGAAGAAGTGGCTAACCAATCCTGTTCGAAAGCTCAGCGCCGGGGGGGTTGGTGGCAAGGGCGAGCGCCAGGTGAAGAGACTGGAAGGCAGACCCCCCCACCTGCCCAGCCACAGCCCTGAGCTGGAGGCCCCCGTGTGCCATGGTGACAGCGACAGTATCCTGCCCCCAAACAGGAAGGAGCtgGAGTGGAGGGACGGCCCCGGGGGGTGCGAGGGAGGGTCAGAGCCAGGGACCCCCCAGACGCACAGCTACCTGTCCCAGCTGCTACAGGGTGACTGCACTGCCACCCTGACAGAGGATCCCCAGACCTCCAATCAGCTGCAAGACGACGATGGCTCCACCCTGCTGGATGATGTCTCCAGCCAATCGTCTGCCACAGTGGACagtgaggaggagaggaggagtgcCTTAGAGAAGAGCATGTATGTGCTGAAGGAGCTCATAGAGACGGAGAAACTGTACGTCAGTGACCTGGGGCTGATAGTGGAGGGCTACATGGCCACGATGGCCACCCGAGGCATCCCAGAGGACATGCGGGGGAAGGACAAGATCGTGTTCGGCAACATTCACCAGATCTTTGACTGGCACAAGGActaTTTCCTTGGGGAGCTGGAGAAGTGCGTGGCCGACCCCACAAGACTTGCCGAGCTCTTCATCAAACACgagAGGCGCCTCCACATGTACGTGGTTTACTGCCAGAACAAGCCCAAGTCCGAGCACATTGTCTCAGAGTACATCGACACCTACTTCGAGGAGCTGAAGCAGCAGTTGGGCCACAGGCTGCAGCTGAATGACCTGCTCATCAAACCTGTGCAGAGGATCATGAAGTACCAGCTGCTCCTGAAGGACAGTGGCTTCCTATCCCGCGCCAAGGAGAGGCGGGTCTTCCTGTTCGAGCAGCTCATCATATTCAGCGAGCCAATCGACAGGAAGAAGGGCTTCTCTCTGCCAGGATACATTTTCAAGAACAGCATCAAGGTGAGCGGGCTGGGCGTGGAGGACTATGTGGACGGTGAACCCTGCCGCTTTGTGCTGACCTCTCGGGGGGCGGACGGTGGCACCATGCGCTACGTGCTGCAGGCCAACTCACCCGAGACACGCGAGGCCTGGGTCAGCTCTGTGGGCCAGATCCTCGAGACGCAGCGCAACTTCCTCAATGGTACCACTCCACTCTCCTGTCCCTTACTGTCCTGCACtcccctgtcctgtcctgtcctgtcctgtgctGTGCCATATTGTCCAGTTCTGTCCCACATTGTGCTTGATGGTGCTGTGCTGTCCAGTATTGTCCTGTTCCGTGCCGTCCTCCTACTGTCCTGTCCCACACTGTCCCATCTCTGCCTCCCTGTAGCCCTGCAGTCACCCATCGAGTACCAGCGGCGGGAGAGCAAGTCCAACAGCCTGGGCCGGGCGATGCGGCCGCCACCCACCGCCTCCACTCTGCGGCCACACTCCTCCGCCTCCATCGACCGCCAGCGCCTGCCCGAACTGCACTCCCACAACACCTCCCTGCCCTCCCTGTACCTGCCCAGCCACAGCGCCGAGCGCCGGCCACACCCCGAGTCATCACATGTACACGCCTCCGCAGCTGACTCGAACCTGAGCTCTCGGACTGTGTCTCCGGCTCACATCCACCTGGCGTTCCCTGAGCTGCCCGGGCCCCCCACCGCTGACCACTGCCCAGCTGTTTCCAATGGACTGTGCCCCCCCGCCCCGCACAACACACAGAGGCTGGGGGACAGCTGTGCCAAAGCCTCTCCCAGTCTGATGGGCGACGTGTTCGCACCCGGCCCCTCCACCACCCAGCGCCCCGGCACCCTGGCCCAGCTGGACGAAGACGACCTATAGAGCGGGCCCAGAGCACAGCCGACACCGCAGCCCACGCCACCCTCTGCACGTGTGTGGCCACGATCAGAACAATTTAAAACCGTTTTTTATTATCgttattgattttattcatattgttaTGAATTTTTCATTGGTTTTGgtttcttaattacttaatgcCATTCTTCAATAAGCCATGTTGGCAGAGACTGCTtctgaatattttttcttttacttttttaatgaaaagtacCGGGACAGACTGATTCTTCGAGGACATTTTATAGGTCAAGCCACACCGGTGTTTGGGTTTAAGGGAATGTCTCATgctaaatgaaaatatatatatattttaatagtaagAGTGCTAGAGTGGGGATTTGGGCATATCTGTAGAAGAGCTGATGTGTCATTGACAAACGCACTAAAGATAAATCCCGATTACCCCACTGCAGCCCTCCTGGAGTTTTCCCCTCCAATAAATAAACTGCGGAAGTGCTGGTTTTCCTCCTCTTGGGCTCGGACCGCATCCGAATCAGGAACGACAATCTGCTTTCACCAAAATCCCGATTTGTTTTAAACCGGGGAAGCTAAAACATTGTGCTTTATCATGGGAGAAAAATCGAATCGTATGGAAGACAGGAACACGTTTTTgcgtagttttttttttaacttgttttctGAATCTGAAGAGGAGCAGCTATATCTTTCAGCTCTTCTCCAATTCTGCCAGACGACACAGCATCCCTCCCGATTCCTTTCTGCACCCTTTCCACACCCTCTCCTAGCTGTCTCTCGGGTACCTGGGCACACCTGGTCAGGGGCTCCACTGCAAGAGCCAATCGGTGGAGCCAACATGGCACAGGGGCTCCTGGTTGATTCATGCCTCCAAATTTGTGACCTGAGTGCCCAAGCCTAATCCTACAGGCTCTTCCATCTCTCCAGCAATCCTCCCTCTTAGTAACCAAGACCTGTTCCTCTAACGGGGGGTGGCCAGACTCCGGTCCTGGGGGGCCCAGTGTCTGCTGTCTTTTATGTTCCAAACAGCTGCTCTCTCAGCAACTTAATTATTTCAACAGTCAagattttcacttatttttccaGCCCATGAACATCAAAGGTTACCACATAACATTTCGGATGCTGCAGAGATTAGTGTTAATTTCATCCGGTTAGTCGATTCATTAGACCAGTGAAACAGGTCAGAGCTGGGCTGAGCACAAACCAGAGCACACTGTGGGAATGGAGGCCTGGGGACTCTCGGGGACCTGGAAGAGGAGCAGGAAGCTCTGTGGTCACTCCTCGGCCTGGGAGCAGCTAGTGGGGCGGATGGAaacttctatttttattttgaattaaaaaaatatatattgcggGGGACATGGTGGTGGCGGGGGGCAGGTTGTACGAAAATTTTACAAAATTGTACGAAAGCTCAGATTTACACAACTCTCTTTAGATTAAGGCAAATGCCTAGAGAATAACAAAACTGGATTCATTCTGAATTCACTTTGTTCTTCTAAATTGCAGGTTACTTAAATAATGTTTCTCTGCATTTAAAGATGGaagaaatgcatacacacacatacattcacacatacataaattcaGACACAtacaagcacacagacacacacacatgtagaccgacacaaacagacatgcaCAGGACACTGGAATcgagacatttttaaaaataccgAACATGATATTAAATCACCTCTGAGGAAGGCTTCTGTGCAACAACAACCCTCTgtcatgaaaaacagaaatacaaacactgaaatactgTTAGGAATTTCAAAGGcctgtacaaaaaataaatggagacGGCCATTAGGACAAGTGAAAACAGAAACCACGTCAGTCTGGCACAACACAAACAGGgcttacacacagacacaacacagagagaatacacaaataaagcagattaaataaaatcttgaaGTGTGCATTCAGGCACCTGGATCCTCATAGCAAACCCTTGCAGTTTGTAAAGCAACTTTATTACctgattattttgtttgcatttttgtattttgttctttttcctcatttaaaaaatgaaaatctgagCTGTAATAGGGGTCTGATGCAGGCCCTGGAGGTCTTCTGGTTTCTCAATCCCCCTGGAACTCAGTCTTCAAAAACTTAATTGACCTGGAGTAATTATTGAATCAATTGGTACACATGTAACTCTGTTCCAAAGTCTTTTATAATtctcaactaaaataaaacaaaaaacaacaacacccaTTTGATTCCAAGTGCCACTACCTATGATTTGCAGCCTTTGTGTAAACGTATGAAATGTTAAGTTATTTGATTAAtgagaccaattaagtaattcacaCCTTGGCTGGTTAGAAAGAGAGCCAGAAGACACAGCAGCCTTCTAGGAATTGAGTACGAGAACCCCAGtctattattactgttatttttttattagcagactgctaataaataaataataagtctGTCAGGTCCATGCCCGCCCCCGAGACTCGCGGAGATTCCCTGGCCATATCAGTTTTCTCTCCCCAGCGCCTCTCTCTCAGACCGGCCCATGCAGAGCCACTGTGAAGAGACATATTGTAACCTGCTATTttgcatgtttatattaaagCCAACAACGACGACAAAAACAGAGAATGGACagcaggaatatatatatatatatatatatatatataatagatttTTTCAGATGTCTGAGTCCGTAAGCACTCTGCTGTTGta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65130 lncRNA upstream 40685 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 202611 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 205205 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 206890 13309616 ~ 13310773 (+) True G51968
TU64982 lncRNA upstream 260023 13253814 ~ 13257640 (+) True G51939
TU65199 lncRNA downstream 152238 13686839 ~ 13687780 (+) True G52100
TU65363 lncRNA downstream 593886 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 1008038 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 1018295 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 1026118 14560719 ~ 14561249 (+) True G52372
AMCG00008863 mRNA upstream 78038 13434457 ~ 13439625 (+) True AMCG00008863
AMCG00008862 mRNA upstream 86422 13387407 ~ 13431241 (+) True AMCG00008862
AMCG00008854 mRNA upstream 139961 13368598 ~ 13377702 (+) True AMCG00008854
AMCG00008855 mRNA upstream 151558 13355405 ~ 13366105 (+) True AMCG00008855
AMCG00008857 mRNA upstream 170301 13333765 ~ 13347362 (+) True AMCG00008857
AMCG00008868 mRNA downstream 37925 13572526 ~ 13582004 (+) True AMCG00008868
AMCG00008871 mRNA downstream 82450 13617051 ~ 13628477 (+) True AMCG00008871
AMCG00008870 mRNA downstream 94572 13629173 ~ 13638246 (+) True AMCG00008870
AMCG00008875 mRNA downstream 149967 13684568 ~ 13685905 (+) True AMCG00008875
AMCG00008877 mRNA downstream 154166 13688767 ~ 13720249 (+) True AMCG00008877
TU65027 other upstream 208233 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 260023 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 292717 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 525171 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 590869 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 947320 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 993217 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 1257568 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 1257743 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 1272696 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043132 True 1617 mRNA 0.51 13 NC_007134.7 27912079 ~ 28007307 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_10749174_10779222.mRNA True 2406 mRNA 0.51 17 CI01000001 10749174 ~ 10779454 (+)