RNA id: AMCG00008870


Basic Information

Item Value
RNA id AMCG00008870
length 3535
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00008870
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13629173 ~ 13638246 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAGGGTAGGCAGGGATGAGGGCAGGCAGGCTGTGTACACTGGAGGAAGTATCATGTTGCGTGGAAGCGAGTGACAAGGGCCCGTACAAAGACAGAACCACAGGCGAGCCGACGTGTTAGCATGTAGCTTAAGAAGGTAATAactgtgtttgcttgtttaaataggtaaattaaatgacaataGACGGGCGTGCTGTGTGATTTACCCAGCTCCTTCCAGCGGAGTTATTAAGACCCAAGACAGCACTGGTTGGATGTGTGTGTCGTGAATTTTCGGGGGCTGTATCCGCTAAACGAACCCACGGCAGCGGATTGTCTGATGCGGAAAGGGTCCGCTTGAACCCGAGCAGGAGAGAAATGGCCACGAATTGACCCGCATTACCACATCCCGGGCCATTGTACCGAATCAGCCTGAACCGAGGAAGGTCTCACTACAAGTCCTCATGGCGACACTGCCGAGAAAATAAGAGGTTAATTGTTCTGGAAAAAGATGATCCTAACCAGAAGGTGCTGCTTTGCAGACAACACGCTTCCTGTCCAGCTCGTTGGAAATACTGCCGCGTCCTTTTAACTGCGGAAGATTGCTAGTCTATCTCGATGAAGAGAGAGTGCAGTGAGAGAGCGAGACAAACGCAGTAAGTTGGTGGGATGACGGCCCTGAGCTCCAGGTGTGCCTTCTACCTGGGCTTCCTGGTGGGCACCTGCACCCTGTACTTTCTGCTGCGCCAGGTGTGGAATGAGAGGAGCCTCAGCCCCCAGCCTGAGATCCTGGAGAAGGCAGGGAGTGGAGGGGGGCAGGCAGGAGGGCGAGTCAGCTTGGAAGATGAAAGCTGGAGACTGGACGGCTCTGCGCTTATCAACTTAAAGCACCCCCATCTGAAAGGGGAGGACAGCCGTGTGGCAGACGAGCTGTACAAGACGGTGCGTGTTCTGTGCTGGGTGATGACAGGTCCCAGCAACCTGGAGAAGAAGGCACGGCACATCAGGGCCACCTGGAGCCGCCACTGCAACGTGGTCATCTTCATGAGCTCCACGGAAGACCGGGACTTCCCCACTGTGGGGCTGGGCACGGCTGAGGGGCGCGACCAGCTGTACTGGAAGACCATCCGCGCTTTCCACTACGTCCACCAGCACCACGCAGCCGAGGCAGACTGGTTCCTCAAGGCCGATGATGACACCTTCGTAGTGGTGGACAACCTGCGCTGGATCCTGGCCAACTACACCCCCGAGGAGCCCATCTACTTTGGCAAGCGCTTCAAGCCCTACGCCAAGCAGGGCTACATGAGCGGCGGCGCGGGCTACGTGCTGAGCAAGGAAGCGCTGCGGCGCTTTGTAGAGGGCTTCCGCACCAAGGTGTGCACCCACACCACCCCCGTGGAGGACCTGGCTCTGGGGCAGTGCATGGAGAAGGTGGGCGTGAAGGCTGGGGACTCCCGGGACACCCTGCACCGCGAGACCTTCCATCCCTTCGTCCCTGAGCACCACCTCACCAGCAAGTTCTCCAAGAGCTTCTGGTACTGGAACTACTGCTACTACCCCATCGTGGAGGGTCCTCAGTGCTGCTCTGACCTGGCCATCTCCTTTCACTACGTGGACGCGGAGCTGATGTACACACTGGAGTATTACACCTACCACCTGCGTGCCTATGGATACCAGCACCGCTACCAGCCTCGCCTCCCCGAGGGCATGGAGAAGCTGGGGGAGAGGGAATGGCCCGTGTGGGGACCAGAGCAGAGCCAAACGGAGCAAGCAAGGGCGGGGCCAGCGGGGTCTGTGGCAGAGAAGGAGTCGTTCAGAAACAGGACTGCAGACACAAAGGAGACTCAGCGATAGGGGCttgtgtgaggaggaggaggtggtggtggtggttttgGGGGGTGGTTGGGGGTATTAGCAGGGAGGAATTGAGGAATGAGGAATTTGTAAGATGCATGTAAGATGCAAATGAGGAATTTGCATCTTGCATACGATCACACCTCTTAAAGTGACCTTGCCTGAGGGATGCTATATGTGTGACACACCACCAAGCACAGAAGTGAACACGGGAGCACACCCCAACACCCCCACCCAACACTGCAGCCTCTGGTGCTGCCCTGCCTGTCCTGTATGCGCCACACTGTGCGAGTTTGCACGGGGGGCCGGGGTGGGAGTGACTGAGAGACACTGCTGCTCGATTTGCTCCAGAAATGGCATTGTGGTGGGTGGCTAAGCAAGACAAATGCGGTAGAGGATGTGTAGACTGACGCAGCTGTTGGTCCTGCTCAAGTGAGGCCGTGACGCGGCTCTTGGGCCTGGACCTGGAGTACTTTGCCAGCTTGctcccttttatttattattattattattttattagagcTTTGAAATTACACAATGGgacaattaatttcttaattgtgtaattggatctgtttttttttttttttttttttttccttcctacAGCTGAACTCAAAGATGATTTGATTTGTACACTTGCATGATGAATTGGgcctgttgttttgttgttgtcggtGGTTCATTACTGGCTCTGCTCGGGAATCTGTCAGCCGTGCCCGAGACTGGAGCACACAGGCCGCGGTGCACAGTGGGGCGGCACCAGGGCTGAATAACAACCCTGTAGAAGACCTGACACCCGATCATGCAGACCGGTCTCTTGTGTGTTTGGTCGAGGGGGGTACAATGCTGAGAACtgacacccccctcccccttctctgACAATTAGTGCTTTTTACAGCTCACCAAATCTTCTTGTGCTAACTGTCAAGGCGAACCACTTCTTAATCCTTACAGGTGTTCACAGAAACGGCAGCCCTGTGTGGCTGGGCTCTTGTATTCTCTTTGTGTGTAAAGAGGACAGACCTTTATACTTAACTGTgctgaaaacaactgaaaaatatatcttATATTCTAAATGTTTAActtgatttttttcatttcaaactcGTAAACACtgttcttctttctcctcctccttcataGTGACCATGGTGAGAAATCGCCATCTTGAGAAAAGAgcatttactttgttttcccCCTCAAGGGATATATTGTcagttcttgttttattttcagatagttgtcatattttatatttctaaatctctctctctctctctctctctctctctctcatatatatatatatttgaattatatgtATAAACCTTGATGAGAATCTTATACAGACCTGGATGGTATGTGCCTGCACTGGACTGAATTGGTATTATGGGATGTGTGTGGTGCATTTTCTTACCACACCATTCACATATCAAAATCCAGCAGAAATGGCTGTGGTGTACAGgggattcatttttttattaaaataattaagcattattattatatcatcatTAAGAATGCCGGTCCAGTCCAAATTGGTACAAGTGTCTCTGCAGCAGGTCAGTCCAGGCCAGGCCAGTCActgactctgcagcagcagttgTTGATACCATAACTCAAGTGGAATTGTTGCACatatttgatttacatttaaaaaaaaaacaaaaaaaaacaattcaaacttcttttttttt

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65130 lncRNA upstream 152195 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 314121 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 316715 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 318400 13309616 ~ 13310773 (+) True G51968
TU64982 lncRNA upstream 371533 13253814 ~ 13257640 (+) True G51939
TU65199 lncRNA downstream 48593 13686839 ~ 13687780 (+) True G52100
TU65363 lncRNA downstream 490241 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 904393 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 914650 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 922473 14560719 ~ 14561249 (+) True G52372
AMCG00008871 mRNA upstream 696 13617051 ~ 13628477 (+) True AMCG00008871
AMCG00008868 mRNA upstream 47169 13572526 ~ 13582004 (+) True AMCG00008868
AMCG00008867 mRNA upstream 94572 13517663 ~ 13534601 (+) True AMCG00008867
AMCG00008863 mRNA upstream 189548 13434457 ~ 13439625 (+) True AMCG00008863
AMCG00008862 mRNA upstream 197932 13387407 ~ 13431241 (+) True AMCG00008862
AMCG00008875 mRNA downstream 46322 13684568 ~ 13685905 (+) True AMCG00008875
AMCG00008877 mRNA downstream 50521 13688767 ~ 13720249 (+) True AMCG00008877
AMCG00008876 mRNA downstream 96728 13734974 ~ 13738084 (+) True AMCG00008876
AMCG00008880 mRNA downstream 177179 13815425 ~ 13823056 (+) True AMCG00008880
AMCG00008885 mRNA downstream 261045 13899291 ~ 13904755 (+) True AMCG00008885
TU65027 other upstream 319743 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 371533 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 404227 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 636681 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 702379 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 843675 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 889572 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 1153923 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 1154098 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 1169051 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile