RNA id: AMCG00008874


Basic Information

Item Value
RNA id AMCG00008874
length 1566
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00008874
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13580416 ~ 13584831 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGAAAAGACAgGGTGCGACAGAGAAACGTGGGGAATcctttttttgtactttgtaaatAATCCGTTCACTTTCTCATTTcggttttgcttttgcactttcTCTCGAAGTGCCACAATCACGGCAGCAGGGTTTAGCCGTTTCGGTTCGCTTGTTGATTTCCCTCCTCTGGCTGGGCTGGATTTGGGCCGGAGTGCGGAAGGGTCGGCCTCCTGGGGAAATTCTCCAGGACGCTCTGTCACACTACAGCAGCCAAAGCTGTCAGTGTTCACAGCCAGCTGGCCGGCTGCTGTCTTCTACCGAGTGACTGGAGGGTTAGAGCCTATTCATCACCATTTACTGACAGCACACACGCCCCCGCACAGAAACACTCTTGCACAAACAAGATATGAAGGGAATTTGGTTGGCTTTGTTGGTGCAGTTTTGTGTTACACACTGTTGTGTTATGCAGTGCAGGAGCACTTTACTTtccaccccccagcccccatGTTAAAATCTGAGTGGCATATGGCAGCTGGACAGGGCATTCTGCACTGGACATCTCTAGCCCTGTTGATTCAgttctttgtgttgtgtgtttttgcttctGTGCCAATTAGTAAAATATTGTGCATGCTTCCGAGGGAAAGCCCTGAGGTTGACCGTGCCAGTTCAGCAAGGGGAACAGGTGCCGGAATGAGGAAACGGGCGCTGCACAGAGCCGGGCCCAGTGGAGGCTGCACAGGGGATCAGGGTGCACTTATTGTCGGGTTTACGAGTTTGTTATTTGCGAATCATTCTTTGCAGTGCAGTACACGCATTGACGCACAGTTCCTTCTGAAAGCATGGGACCAATATCTTGCTCTGCTTCTCCTACTGGTTGGGCGCTTGCTTCTGGTTTTAAGATTCTGTGCAAGGAGAAGGCCCATTTTTCAAACCCCCTCCTGCCGTGATCAAGCCCAGTACTCGGACCTATCTTTGCAGTATTTCGTGACAGTTCGCAAGCAGGTAGCTGCCATTCCTATAATAAGGCGAGAGCTGCAGCCTTTGGCCCAGAATGGAAATGTCCGCCCAGCCTCAAACCCAGACAGTGGTAGTCTTCTCGGGGGATTTCTCCTGAGGGTCATAGGCACAGAAACGGGACgggatgggggagagagagagagagaagtcaaCATTTCTAGGCTGATGCTgattttgTGGCGGGATCAGCCATACCTTCTGCTGCTGGATGTGGAGCACGGCGTCGTGGACGGTCACAAAGATGTGCTGGGGGCTCATCTCATCAGGCCACTGGATGTCAGGATCTTCAGCACACTCTCTGCAGACgacaacacacacacggctGTCGTGAGACTCTGTTCGCAGTCTGGTGCGTGTGTTTATACTGTGCTGCTTTTTCAATCAACGCACGCTGAAGGAAATGGCACGTCTGCCCAGGCTCATGTGCAGTGCCAGCCAGAGGCGCTCGTGTTGTTGTGCTTTGTTTCTTTGAACCAGTTCACATTTGTAACACGGGAAATGCCGCTAATGGCCAGACAAAGCAGCTTCCTCCCCCCTACCCACCTCCCCTGGAGCTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65103 lncRNA downstream 124564 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA downstream 140790 13438088 ~ 13439626 (-) True G52041
TU65035 lncRNA downstream 270991 13307422 ~ 13309425 (-) False G51974
TU65023 lncRNA downstream 280133 13299338 ~ 13300283 (-) True G51965
TU65000 lncRNA downstream 322797 13253853 ~ 13257619 (-) True G51948
TU65235 lncRNA upstream 186729 13771560 ~ 13776929 (-) True G52131
TU65263 lncRNA upstream 238282 13823113 ~ 13830315 (-) True G52157
TU65338 lncRNA upstream 420896 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 542408 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 687143 14271974 ~ 14275087 (-) True G52296
AMCG00008869 mRNA downstream 40130 13537993 ~ 13540286 (-) True AMCG00008869
AMCG00008866 mRNA downstream 92797 13480978 ~ 13487619 (-) True AMCG00008866
AMCG00008865 mRNA downstream 107200 13459561 ~ 13473216 (-) True AMCG00008865
AMCG00008864 mRNA downstream 124287 13439922 ~ 13456129 (-) True AMCG00008864
AMCG00008859 mRNA downstream 249414 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008873 mRNA upstream 256 13585087 ~ 13608948 (-) True AMCG00008873
AMCG00008872 mRNA upstream 53826 13638657 ~ 13643375 (-) True AMCG00008872
AMCG00008878 mRNA upstream 135879 13720710 ~ 13734038 (-) True AMCG00008878
AMCG00008879 mRNA upstream 153051 13737882 ~ 13771390 (-) True AMCG00008879
AMCG00008882 mRNA upstream 246376 13831207 ~ 13839926 (-) True AMCG00008882
TU65044 other downstream 255189 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 270991 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 318594 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 482482 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 578528 13000826 ~ 13001888 (-) True G51867
TU65198 other upstream 100504 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 353620 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 359167 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 1900551 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 2252158 15836989 ~ 15837801 (-) True G52782

Expression Profile