RNA id: AMCG00008876


Basic Information

Item Value
RNA id AMCG00008876
length 1434
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00008876
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13734974 ~ 13738084 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTCCGCAGGTGCCTCGCGCGGGTTCTCCCTTTCCATCCCGATGTACCCGGATGTTTCTGTGTGGGATTTACTGGGGTTCCACCACCCGGTCCCGTTCGTCTcctatttacaaaaaaatgccATTTTCATACGGTGTACCTCTAAGCTGGGCAACACGGAGGGGCCTCTGCAATATCAGTAACAAGCCACCTGTCAGCGCTCTGGACACCTGTTTGTATAGTGTTTTGCGTAGGCAAATATTCAACGACTAGgtacagatttaaaacaaaacaaagaaatacgTTTTTTCTCTTAATCATCAATGTATGGACTTTAATATGGGATAATTAAACGAATAACTGAAATTGTTCGTATAATGTTTGGAATTGGAAACCCAGCCTTGTGATTGGCCACCAGAGCCTGACGTCAAGCTCCTTGGTTGCCATGGTGGCGACGTAAACAAGGCGAGTCGGCGCGGAAGAGTCGCGCTGCGCAGCCGCTGTGCTCCAGGAGGAACATGGCCTTTTTCGGACTCACCTACATGGGATACCAGGACCCGTTCAGATCCAGGAGTTTGTCACAGACGCAGAGGACACGGTCGGGACAGGGTGGCGAATCGCTGAGTGAGGGATCCAGACTGCCCCCAATCCAGACGGAGGCCAAGCCCCCCACCAGCAGCCTGGAGACACACCGTGGCAGCCAGCAGAGGCACCAGGACATGGTCCGACTGGCACGCACCCCGCAATCACCCAACCAGATGTACCGGACACCGTTGACCAACGGGCAGTGCTATGGCTGGTGGTTGCAAGGGAGCGGGCAGACTGGCATCGCGGACACAGAGCCCTGGACCCAGGTCCAACGCTTTCCCCGGAAAGACAGCGAGATGACACGGTTCGTCAAGGAGATGTCCATGACCAATCGGCAGTTCAGCTTATACTGACCCGCCCCCCCTCCTCAGCCAACAACCAGCTCTGGGAGACTTAAATTTAAACTCGCCCCCGCCACCTTACCCAACAGACACCTCTCTGCTCCTTCAGTGTTGGGACCAGCATCCGGCAGCATCAGAACTCTGCTTATGTCTGCCAACACTTCCTCCTGGTCTGAATAAAAGATCCTTGAATTtttgttgctttctttcttttggacAGAACTtgaccccccaccctccctttAGAGGCATAAGAGAAGTATACACGCCCCCTTAGTAACACACTATTCACGATTCACGATTGAGAAGGAGTGTCAGAAGGAAGAGGAAAatggacattattttaatttcagtgaaatactgtaaaacaaacaaccaaaacaaagcagaacaaaGTCACCTTAAACAGCttcatcaattaaaaataagccATTGCTGCCCTCTAGGGGCGAGGCAAAGTAAATGCATTTCGCAGCATTCTGGTGCTGAAATTAAATCAGTGAGGGGGAGGAGAGCAGGGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65199 lncRNA upstream 47194 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 257996 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 419922 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 422516 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 424201 13309616 ~ 13310773 (+) True G51968
TU65363 lncRNA downstream 390403 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 804555 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 814812 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 822635 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 824361 14562445 ~ 14562710 (+) True G52374
AMCG00008877 mRNA upstream 14725 13688767 ~ 13720249 (+) True AMCG00008877
AMCG00008875 mRNA upstream 49069 13684568 ~ 13685905 (+) True AMCG00008875
AMCG00008870 mRNA upstream 96728 13629173 ~ 13638246 (+) True AMCG00008870
AMCG00008871 mRNA upstream 106497 13617051 ~ 13628477 (+) True AMCG00008871
AMCG00008868 mRNA upstream 152970 13572526 ~ 13582004 (+) True AMCG00008868
AMCG00008880 mRNA downstream 77341 13815425 ~ 13823056 (+) True AMCG00008880
AMCG00008885 mRNA downstream 161207 13899291 ~ 13904755 (+) True AMCG00008885
AMCG00008886 mRNA downstream 168218 13906302 ~ 13921627 (+) True AMCG00008886
AMCG00008884 mRNA downstream 204739 13942823 ~ 13948990 (+) True AMCG00008884
AMCG00008883 mRNA downstream 219284 13957368 ~ 13983630 (+) True AMCG00008883
TU65027 other upstream 425544 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 477334 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 510028 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 742482 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 808180 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 743837 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 789734 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 1054085 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 1054260 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 1069213 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile