RNA id: AMCG00008884


Basic Information

Item Value
RNA id AMCG00008884
length 3330
RNA type mRNA
GC content 0.39
exon number 8
gene id AMCG00008884
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13942823 ~ 13948990 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAAACCTATTTCCACTGGTGCCAGAGCAGAGGCAGCCTGCTAGTGCAAAGTGGTATGACAGAAGGGACTATGTCTTTATCGAATTCTGTGTGGAAGACAGCAAAGACGTCCAAGTAAAATTTGAAAAATCCAAACTTGGTTTCAGtTGTCTTGGTGGTACAGATAACATCAAACATCACAATGAAATCGAACTTTTTGAAGCTATCGATCCAAATCTTAACTGGCTCAGTGTTGACTTCAATAACTGGAAGGACTGGGAGGATGATTCAGATGAGGAATTGTCCAGCTTCGACCGCTTCTCAGAGATGATGAATACCATGGGTGGAGAGGATGAGTTGCCAGAAGTGGATGGGGCAGAAGATCGGGGGGCCTGGGGGTCTGCCCCTTCCTGCCAGGGTTTTAGGCCCAGATCACCACGAATCGGAGCCGACTGGAACATCTCAGAGTGCAACAACTCTgaGGAATCGGCAGATAGCGATGATGAAAAAATGCCTGATTTGGAGTAAACAAGGAGTATAGGAATCCTTATACAGTTGGAAGAAAGAATCATCACAAAACTgttaataataaagaagaaatcaaaaaacaagaaaaacatgtttagatTTGAGTTGGTAGCCATGCGATAAGAccattgtttttccattatttttttttaaagccatttaCAACCATTTGAGAAAAATGCATCACTGAGGGTTGATATACATACCACAGCACTGTCCAGTCTGCACACATCCTACAGTgctgatttttcttctgttctgttGTGCATGGACTGTTCACTGAGTCTTTATGCTGTTGTGAGGTTTagtcatttattaaatttaaaaaaaaaaacacccaaaataaatcaaatcagaaCTGGCAGTGGTGAGAAATGTGCAAAGAGGTTTGAACCTGAATAAAgtaataaacttttttttaattattattttttaatgttttgtggaGATCAGTGAGGCTCTGTATTCATTGAAATGTCAGTGGCCTTTGCTGATCAACAAACCAAATGCAAGCTAAACAGTGAAGAATTAcacctcttttcttttctacttCAATAAAGTTGTCCTGCCCCCCCTTCAGTCAGTGGTGTTTGTGGGGTGAtctgcagaacctctgtccatTCTTTTGATGTAATGAGTCTTAGCTGAAGTATAAGAGAAAAcagttttcttaaatgtgttttacagttgCAGGTAATGTTCATAAACATTTGTTAGTATcataaaatacagcattttaaatactgggGCTGTAGTTTTATTTTCCGCTCTGCTTTGTTCTTAAGGGTGCCTGGTTTTCATACTTAATCTGTTTGTGCCAGTGTGgtggtttttaattttgtttgttttgtttttggtgggggttgtttttcttccacaatCCCCATTCTCCCCCTTGTTTTTAGTATTCAGTTTAAGTTTTGCTGCTTTAAAAACTGTACACGTTCCAGACGTCACTTTAACATGTCCAGTATATATGATATCTACTCCACAGAGTAACAAAGCTGTTTGTGGTGATTCGCTCCCATTCATTGTTTTATACGGCATTGAGAAGCAGGAATTGGGACATTGTGGATTTCTTTCTTCCATATGTAAGcgaaaattacaaacaaaaaatacatgtcCAGATAAGGTGCAGCACAAAGAAGCCTGTGCATTTGGTGCTTGTTTAACCCTCCCTCCACGCCAAGTGGAGACGCCAAGGGTTCCAGCTGTGCGTTTTGTTGCTTCTCAGTCGGAAACGGAAGAAAAAAAGCGATTGTAGATGACCAAACTGTATTTGCACTGTCAGAATACAAATGCaagagtgaagaaaaaaaaaaaaaagataatacacTATTCCTAGTATGTATGTCAACCTGTCAGCTGCCAGCAGGCTGAAAGTCTTCAGTTTATGTTGAATGCCGTGGGAAATTTTTTTATTGTCTACATCTTTCTAATAAACTGTCTAAGACtcatatttaatttctgtatgtctgtctgcagtttctctGTGTACAGCTGGTGGAgattcatcttttttttgttttgctgttcaGCTGTGGCCTCCCTCTTTTTTTAGCTATGCTGGTTGTGTGATGCTCGATTGAAACTGCTATCTTAtaaatgcattgtgtgtgtgtgtgtatgtatatatatatatacataatgtatttatcaaGTTTGACATATACAAACTGTATATAAGGAGATACCTATCACATCTTTGTCAGTCTTTTTTGCTGCTTTTTGCAAAATGTGCAATTTCTTAACCAATTATACCACCTGATGATCGCAGCCAAGTGTGCTAGatagtatatacacacactcacattttTCGTTCAAGAGCACACTGACTTGTTGGCCCCTGTCTACCTTTCGGTGGGTGCAGTGCTTACTGTGTGTATAGTGGCACCTAGTGGGTAATATCTGCCCAGTTCCTTGTTTCACAGAGGAAGCAATGATGTAAGTTCCCAAAGCTTTCCATGTGAGAACAAGGGTCTGCCATGAAGTTTAAatgttctttctctgtctcttaaATCCCagactataaaaataaataaattgggtTTCAAATTGAGTCACCTTGGTAGagggtgttttgtgtgtgtgtgtgagttgtcAGACACTGCAGGTGTCCTGTATGATTTTTCCTTCACGTTCACACACTGTTCCCTTCCAACATATCCCTTATATAAGCccagagtgagtgagtgagagagagatgtaatCACTTATTTCAAAGAATAAAGTCAAACTGCTGAATAAACAACACTGAATTTTGTTGAAATCAGTCATGCAGGCTTTAGTGAGGCTTTTCACCCAACAGCCAGCACATTTTCATGGATGGGTGTCTGGTGGAAATGGACGGAGGGCAGCCCCAGAGATAGCTGTCTGTATGATGTCTCTctcacagctgctgctgcagagatGCCAGTTACACCACACCCCTCCTGCTGATTGATGTTAGACGAACAGATGGACAGGAAGTTACCTGTACACACCCTGTGTACCAATGCAGGCTGACATCTTGGAAGCCATTGTTGTggatttaatattattatcaataatagtAGTAGGCTGACTTGAGCAATGAGCAGCAGTGAAGATATGTGAAGGTGTTTTTCTGGAATGTTTTTGTACTATTTCATAATAAAGGGACGGTTTAAAATCAAAcatcaaaaatcaaacaattacTTATTCATCGAAAATAGTGTTAAACGTAATATGTTAAACGGTTCAGCAGATTACAGCTTGTGaaaataatctatatatatttatctagtgttattttgaatttatgtAATAATTTGTCATTCCCATCAAATACAACAATGTTTG

Function

GO:

id name namespace
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K15730 PTGES3; cytosolic prostaglandin-E synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65199 lncRNA upstream 255043 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 465845 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 627771 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 630365 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 632050 13309616 ~ 13310773 (+) True G51968
TU65363 lncRNA downstream 179497 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 593649 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 603906 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 611729 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 613455 14562445 ~ 14562710 (+) True G52374
AMCG00008886 mRNA upstream 21196 13906302 ~ 13921627 (+) True AMCG00008886
AMCG00008885 mRNA upstream 38068 13899291 ~ 13904755 (+) True AMCG00008885
AMCG00008880 mRNA upstream 119767 13815425 ~ 13823056 (+) True AMCG00008880
AMCG00008876 mRNA upstream 204739 13734974 ~ 13738084 (+) True AMCG00008876
AMCG00008877 mRNA upstream 222574 13688767 ~ 13720249 (+) True AMCG00008877
AMCG00008883 mRNA downstream 8378 13957368 ~ 13983630 (+) True AMCG00008883
AMCG00008888 mRNA downstream 36181 13985171 ~ 14006013 (+) True AMCG00008888
AMCG00008889 mRNA downstream 58608 14007598 ~ 14013737 (+) True AMCG00008889
AMCG00008893 mRNA downstream 140663 14089653 ~ 14092404 (+) True AMCG00008893
AMCG00008892 mRNA downstream 154361 14103351 ~ 14109000 (+) True AMCG00008892
TU65027 other upstream 633393 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 685183 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 717877 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 950331 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 1016029 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 532931 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 578828 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 843179 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 843354 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 858307 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile