RNA id: AMCG00008887


Basic Information

Item Value
RNA id AMCG00008887
length 5787
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00008887
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13891280 ~ 13897417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagtTACCATGTCAAACACTTGAAATTGCTTATCCCACAATGTAATcgtgtgtggcagtgtgtagTATTGAAGTCTGACACATGTATCTGTGTCTTTTGTGTAAACTGGGCTGACAGTACAGCTGTACCGCTACAACAACACTGCAGCACACTGTAGCGCCCGGCCGCTGTCagcgctgagagagagagagagagagagagagagagaagtgaaagCAGGGTCCTTCACAAGTATCACTTCCCACTATTGGGGCTGGACCTACAAACGCTAATGCCGGTGGTAACGTTGCTTTGTTTGGGTGTTCATGTGTGTGGTGTAGGCGTGTAGAAGCCTCTGCTTTCCAATGCACTGTGAAACCCTGGTTGTTAGTGTGTGAATGCAGCCTATTTAAAGCAACACGCTCCGTGGCGCAGGCTTCACAGTGCAGCCATCAATAGCAGGCAATCCCGTGCCTCTGTGGTGGTGGAGTCCAGCTGACGGAAAGGCCGAGAGATTGTGCAGGTACGTGACTCTACCCGGCGGGGTGATTGTTTCTGCAGGGTATTAAACATCATTGTGGTTATGATGATTGAGTCCCGGGTCCCTCGGTTGCTTGTCCCCGTCTGACAGCGGCGGCGGTCGGCGGGGCCGCCTCGCACACGATGCGCCCGTCCGGTGTGTGTGATCGAGCCGGACACGCCGAGGTGTCAGTGTCGCTCTGTTGTCATTTCTTTAACGGTCCGTCTGAGACAGTTGCCCCCGTCGTCTCATACACGCCCCCTCCACCGCCCCTTTTACAGTTTCTACAGCGAACAGTTCCTTTGTTTGTCCGGAGTTTTTCAAATCCCATCAAACCCCCCGATGTCCTTTTTAATAATCACAGACAGtcaaatgttataataatatagtaaaGAAAAGTAGCTATTACGAATGTGTTTTTCAGAGAAGACATTGAGCTCATCTCGTTCTTTATCAGTTTTACACGAGACGATAATTATATGTACAACTCgtacagctggtttcacagagctTGACTGGCACTAGTCTGTGACTGCTCTACCTACAATAACATCCAAGACCAGAGCAAGTCTGTActggaataatgtattttaaaattgagttaatttattatcattattgtcattgttatttgcCTAATGTTGTATGTTAgtgtgtatattaatttattataatgatgatattGTGTAATGTTATTTCTATGGGGAAGTGAACTTACACAGATGCCAGTAAAATCCTGTCCTCCACGTGTTCCCTTACGTGTAAATGAcccaacccccccaacacacacacccttgcCACCTCACCCTAGTGGTGCCCATCCTCCGACGTCACAGGGCAGGTGGGGATTTGGacaattaaattactgtaaattaCTTCCTGTTAACTGTTGAACTTGTAAAGCAGTGGTGGGCATCCTGTCTGCATTTTATAGTTTgtgtctgttctttttttattctgttgttgGTTTTCTGCAAATCTTGACTGTTACAACATTGAAGTGGAAACCATCAGGTTTGCAGATTGTAAGGATGTGAAATGCAACCACCTTACTGTAGAGTTTGTAGAGAACTGAAATGCCTTGCTGGGGCCACCCAGAGTCTGAGATAAGTGGGGTGTTGGGGGTCAGGCTTCAGACCAATGACGTTGGTATTTGCTTCAattgtgttttccttgttttgccCCTCCCCCCGTGGTGGCGCTGCAGTGTCCTCGGCGGCGATGAGCGTGCGCGCGGGGCGGGGCTGTGATGAGGTGCTGCTGTCTCCAGCCATGTGGGACTACCTGTCGGCTGGGGGAGGGCAGACCTGGCTGGCGGATTTCCAGGATGGGCACGGACTGAGCGTCAGCGTGGTGCGCCGCGTGGACAGGAGTGGCTGCTGCACCGTGCGACTGCGGCCAGTGGAGGCCGGTGCTGGGGCTGGGGCCGGGGCCGGGGCTGGGGAGCCATCAGTCTCCCCTGCCACACGGAAAGCATTCATGGAACTGTGCCGCAATGCCCGTAAGGAGATGAACAGAAAGGAGGGGGCGCCCAAGCGGAAGCGCTCTCTGCTGCcctgtgtgggtgggggggagaccGACAGTGAGGGCAGCCTCCTCCCGTTGCCCCAGCCGCTGCCCCCCCTGCCCCCGCCTGCCCCGCCCCCCCGACGCTCCCAGAGGCAGCAACTCCGGCGCAAGAAGTCTGCAGACCTGGGTGGCAGTGGGGCAGGGGTGGGCCAGGACCTACAGCCCATGCGGGAGGCGGAGGTGGTTGCTGTTGGCGTTGCCATGGGAGTCAGTGTGGGCGTCGCCTCGCCAGCCGAGGGGGAGGATGGCGGCACCTGCTCCATCTGCATGGGGGACATGATGGACAGAGCCACACTGGAGCGCTGTGGACATTCCTTCTGCCGATCCTGTCTGGACCGCGCCTTCCAGGTGAAGCAAGCCTGCCCAGTGTGCCGGCTGGTGTACGGGCAGCTGATCGGGAACCAGCCAGCCAATGGCACCATGCTGGTGGAGCGCgagccggagctggagctgccCGGCCACGAGGGGCATGGCTGCATTTGCATCATCTACAGCTTTCCCCCCGGCACACAGGCGCAGGAGCACCCAAACCCGGGGGTGCGCTACCCAGGCACGGAGCGAGTGGCATATCTGCCTGACAGCCCTGAGGGCAACCGCGTCCTGGCACTGCTGCGGCGCGCCTTTGAGCAGCGGCTAGTCTTCACTGTGGGAACCTCCATGACCACTGGGATGAGCAACGTCATCACCTGGAATGACATCCACCACAAAACCTCCATCTGGGGCGGCCCTCGCTGCTTCGGGTATCCAGACCCAACGTACCTGGTGCGGGTGACTGAGGAGCTGCGAGAGAAGGGGATCACTGTGGAGTGAGGAGGGGGAGCAAGAGGAGGCTGTGATTTCTGCTGGGTCGGGGAATGTAGGAACACACAGGGGACCCTCTGCAGCTGCcgccccccccatccccccacccccaactgCTCGCTGCCGCTGCTGTGgctgttttaaaaagtaaacacacACGCAGACCAACCTAGAGACacttgtgtgcctgtgtgtgcgtgtgtgcggcTACAATTTTGGGGGAATGCTCTGCGTGTCAGTGCCCCCCTCCATCTTGGctgtttcagttattttcctTGGGGATGGGGGGTAGGGTCAGGGTTTTGAGGGAcacatgctttgttttgtttgtttgtgtgatttgttaTCTTCCTATTGTGGTCGCAGGATGGAGGGGCTTGGCTTTCTTTGTGCTGGACAGGGATGGCTGCCGGAAGGGGGTTTGGAGAGTGGTAGGCAGAAGTTTTGGGAGGTTGTTGTATGGCTGTGGTGGGACAGCAGGGTTATGTTGTCTGACCCCGACTGTGGACAGGCCTGCCAGACAAACATCATCAAAGCAGCCAGCCAGCCTCTAgtctctcccctctcccatctcccatcctctgtctcctctctcgtctctctcctcttccctctgCCTGTGTGCTTCCAGCTGCTTCTGAGGTCCAGCACAGCCTCGATCAGGGGCGGGGCTGCTGTCTGCTCGACCGTGAGAAGCATGGGGAGCACGTTGGCCATCTGGGGCTCGGACAAGGTGTCCCACCACTGTGTTCCCCTATTCCGCAGTGCAGGGCAGCTGTGCACAGGACTGgccgtctccccctccacagACCATTGGCGACAATCAGAAAGGTTCTGGAATTCTCAATGTCCTGCCCCCCGAGTTCCAAATGGAGGACACATGACCTTTCtttttgatcatttatttatttatgtatctactTTCTCCTCTCTTCCCTCTTCCATCTTTGATATATGAGGATTCCATTTCCAGGTCAAGGGTGTTCCCAAGGACTCTTTCCTGGGGTCCGAGCGTCTCCCCAGGAGCCCTGCGCTTCCGCCACTACCCAGCGCTGCTGCGTTTTTCATTAAGCTGCTCATCCTGATTTATGTGCAGAAACAGAAGGTGCAATATAATATAGCTGAATATCTTGGTGGCGTGTGGGGAGAGCGGGTGAAGAGTTGTTGTcgttgaaagtgttttttttggggggtttgctTTTTCACAGCACCTATCATGTTTACACAAAAACCCAGTGTCCCCTCCGCTCTCCCCTTTGCCAAGCTGGAGatgtctgttgtttgtttttaaagttgttcATTTTGGAGATATGGGCTTGCAGAGAGCTGCAGTTCAGTGTATTAAGAGACCCGGTGGCTGTcaatcagtctgtctgtctctgagagagaactagagagagagagagagacggagagtgCTGGTGTCAGGTGGGACAGGATCAGGTGGTGCTTGTTGGTGTGTGCGGTGGGAGCCGTGAGAGAAGTGCGAGATGAACTGTTGGAAGGAACAACCCCGTCTCTTCAGTGCCTTATCTGCTCAGTGTGAGAGAAGagtgttatgattattatgagtCTGTCCTTGTTTCATCTCCTTGCTTCACACTGGCAATAAATAATCATTCTGAGGTGCTTTCCCTGGGTCGTGCAATTCAGAGTGTGAAATCCCCGAACACCTCTCTCACAGAGGTGAAACCCAGATTGGAGCCCCCCCCtcttaaatttatttaaaaaaaaataataaataataaataaagctgcCCCACATAAAGTGACCATGCGAAAATAGCTCTGTGTGGGCTGCCAGGAAGGGGGCAGAAGGAGGAGGGATTTGGTGTTGCACCGTGCTGTCGTTCTgtagtgttattgttgtttagtTGTTCCTGGGTTCAGGTTGGCACTCTAGGAGTGAGAGTGGTTTAAGAACAAGAGTAGGAATGAaaagggagagcgagagagagagagagagaggaggtggaACAAAACTGTCTTAGGATCCTCCGCTATCGTCGTCAGCGCCACGATTGTTCTCGGTGTCTGGCTTTAAccgctatgtatatatatgttctttTCTGTTCCTTAACCATTACGGGTCCTGTATTTGATGTGGAATTAGCAGGTCATGCGTTTTCCAGTGTGGAGGTCAGGAGGTTTGAGTATAGGTTCCTTTTTTGAGTCCTGGCTCCACCCCCTGTCTGCCTACCTGCCTCATGGTGCATCTCCCACTGGACCTAACTGAACTGGACCGGACAGGccaggactggactggacctCGTTGTGCTGCGTCTTTGGGCCGAGACATAAAGCACAGGTCCTGATGTCAGAGACTCTGGAGCGGCAGCTTCACTGATGCTGCTCTTTTCACCTTCACCACTGCCTGTGAGTCTGTTTGGATAAAAGGATGTACGAAGTtaattatattatgatttttattattgttatgggGCTGAAATCTTGAGTTGTATGGAGGTCACcctatatatagatgtatatttcCACTCATTGACATATTTGGAAAGTCATTAAGGTAATTTGACAGTTTCAAATCGCCAAGCGTTGCATTTCATTCAAAAGCAAGGGATTGTCTACTTCAGAATGTGtcgttattgttattattttaatttttattattttgttgtcacagttctgttcatttttgtaaagggaccaatacaaatgtttgtAGAGACGAGGCGTATGGAGAggtgtccacacacacacacacacacactacatctTCACTTCAGATATTTCTATGCAGTATAAGAATTTAAAACCATACATTAtaatggaatacatttaaacatatagAGATACTTAAACTAAATTGCACATTGTTATGGAGTAAAATTCTGCTTTTATAGTTGTGTTGATTTCTATTTTTGACTGAAACttctttattatgattattatgattatga

Function

GO: NA

KEGG:

id description
K06058 DTX; deltex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65263 lncRNA downstream 60965 13823113 ~ 13830315 (-) True G52157
TU65235 lncRNA downstream 114351 13771560 ~ 13776929 (-) True G52131
TU65103 lncRNA downstream 435428 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA downstream 451654 13438088 ~ 13439626 (-) True G52041
TU65035 lncRNA downstream 581855 13307422 ~ 13309425 (-) False G51974
TU65338 lncRNA upstream 108310 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 229822 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 374557 14271974 ~ 14275087 (-) True G52296
TU65464 lncRNA upstream 463516 14360933 ~ 14365179 (-) True G52314
TU65458 lncRNA upstream 476174 14373591 ~ 14378330 (-) True G52308
AMCG00008881 mRNA downstream 9789 13866654 ~ 13881491 (-) True AMCG00008881
AMCG00008882 mRNA downstream 51354 13831207 ~ 13839926 (-) True AMCG00008882
AMCG00008879 mRNA downstream 119890 13737882 ~ 13771390 (-) True AMCG00008879
AMCG00008878 mRNA downstream 157242 13720710 ~ 13734038 (-) True AMCG00008878
AMCG00008872 mRNA downstream 247905 13638657 ~ 13643375 (-) True AMCG00008872
AMCG00008891 mRNA upstream 119933 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008890 mRNA upstream 144356 14041773 ~ 14042907 (-) True AMCG00008890
AMCG00008904 mRNA upstream 487152 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008907 mRNA upstream 492772 14390189 ~ 14393018 (-) True AMCG00008907
AMCG00008911 mRNA upstream 594753 14492170 ~ 14495264 (-) True AMCG00008911
TU65198 other downstream 204543 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 566053 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 581855 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 629458 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 793346 13090537 ~ 13097934 (-) True AMCG00008845
TU65308 other upstream 41034 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 46581 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 1587965 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1939572 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1944247 15841664 ~ 15851809 (-) False AMCG00008964

Expression Profile