RNA id: AMCG00008888


Basic Information

Item Value
RNA id AMCG00008888
length 2777
RNA type mRNA
GC content 0.59
exon number 24
gene id AMCG00008888
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13985171 ~ 14006013 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTTCTTACTTAACCTCAGCACGTGCCCCAGTGCCCCTGCCAGTGCGAGCTGAGCTCAGCCCTATTAATAAAGCTCCAGCGCCCTGTGGCCCAGCTCTGCCATGAGGACTGGGCAGGCTGAGCGGCCCCTGCTGCTGGAGCTCTGGCTGTGCGCTGGCCTGGCTGCCACCGTTTGCTGCGGCCTGCTGTGGCTGTGGAGGATGTGGAGGAGCAGCAGCCCCCTGCCGACCACCCTCTGCGCCCCCCTAGGCTCCCCTGCAGATTTGTTTGCGGCCTGCGACATGTCGAAGCAGAAAGCAGTGGACCTCACCAAGCTTGGGGTGGGCCGTGCCATCGCCGTGCTCACCTCTGGGGGGGATGCACAAGGGATGAATGCTGCAGTGCGTGCGGCTGTCAGAGTTGGCATCTACAGCGGGGCCAAGGTCTTCTTCGTGCACGAGGGCTACCAGGGCCTGGTGGATGGAGGGGACAATATCCGTCCTGCCACCTGGGAGAGCGTGTCCATGATGCTGCAGCTGGGAGGCACAGTGATTGGCAGTGCCCGCTGTCAGGATTTCCGGGAGCGGGAGGGGCGCACCAAGGCAGCTTATAACCTGGTGAAGCTGGGCATCACCAACCTGTGTGTAATCGGGGGTGATGGCAGCCTGACTGGCGCAAACCAGTTCCGCACGGAGTGGAGCGACCTGCTGGCTGACCTGGTCAAGGCGGgGAAGATCTCTGCAGAGGAGGCTCACCGCTCCTCTTACCTGAACATCGTGGGGATGGTGGGCTCCATCGACAATGACTTCTGTGGTACGGACATGACCATCGGCACGGACTCGGCCCTGCACCGCATCATGGAGGTGGTAGATGCCATCACCACCACTGCACAGAGCCATCAGAGGACCTTTGTGCTGGAGGTGATGGGCCGACATTGcgggtACCTGGCCTTGGTCACTGCGCTGTCCTGTGGGGCTGACTGGGTCTTCATCCCCGAGATGCCCCCTGAGGAGGATTGGGAGAACCACCTGTGTCGCAGGTTGGCTGAGactcgTACCCGAGGCTCCAGGCTGAATGTGATCATTGTGGCTGAGGGGGCCATCGACCGTTCAGGCAAACCCATCACCTCTGAACAGATCAAGAGAttggTGGTGAAGAGACTGGGCTATGACACTCGAGTCACCATCCTGGGCCACGTACAGAGAGGAGGCACCCCCTCCGCCTTCGACCGCATCCTGgGCAGCAGGATGGGTGTGGAAGCAGTGATGGCTCTGCTGGAGGCCACGCCGGACACACCCGCCTCTGTGGTCAGCCTGTCGGGCAACCAGGCTGTGCGCCTGCCACTCATGGAATGTGTGCAAGTGaCTAAAGATGTCACTCGGGCGATGGCAGAGGGGCGCTTTGAAGATGCCATCAAACTACgtgggagGAGCTTTGAGAACAACTGGAACACATACAAGATGCTGGCTCATGTGCACCCCCCAGAGAGCAAGcagTTCAATGCAGAGacTGCCTTTAACATTGGGATCGTGAACGTGGGTGCCCCCTGTTCGGGCATGAATGCGGCAGTGCGCTCCACCGTGAGGATCGGTCTGGTGCAGGGTCATAACATGTTTGCTGTGTACGACGGCTTTGAGGGGCTCGCCACAGGAAAGATTGAGCCAATCAAGTGGACAGACGTGGGCGGCTGGACGGGGAAGGGAGGCTCCATGTTGGGAACCAAGAGagTGTTGCCAGGCTCAATGATGGAGGACATCAGTGTGGGCATCAGCAAGTTCAACATCCATGCGCTGGTCATCATTGGGGGCTTTgaggcatACACCGGTGCTCTGGAGATGGTGGCAGCACGGGAGCGCTATGAGGAGCTGTGCATCCCGCTGGTGGTCATCCCGGCCACTGTGTCCAACAACATCCCTGGCTCTGACTTCAGCATCGGGGCCGACACTGCGCTCAACACCATCACCACGACGTGTGACCGTATCAAACAGTCGGCGGCGGGCACCAAGCGACGCGTCTTCATTGTGGAGACGATGGGGGGGTACTGTGGGTACCTGGCCACCATGGCGGGGCTGGCATCCGGGGCAGATGCCGCCTACATCTACGAGGACCACTTCACCATCCACGACCTTGAGGTGAACGTTCAGCATCTGGTGGAAAAGATGAAGACCACGGTGAAGAGAGGCCTGATCCTCAGGAATGAGAAGTGCAACTCAAACTACACCACTGACTTCATCTTCAGCCTGTACTCAGAGGAGGGCCGCGGCATATTCGACTGTAGGAAGAACGTGCTGGGGCACATGCAGCAGGGTGGCACCCCCACACCTTTCGACAGGAACTTTGGCACCAAGATGGGAGCCAAATCTGTGCTGTGGCTGACTGACAAGCTCAGGGAGTGCTACAGACAtgGCCGTGTGTTTGCTAACACCCCAGACTCAGCCTGTGTTCTGGGCATGAGGAAGAGAGCCCTTCTGTTCCAGCCCCTGGCCGACCTCAAAGCGCAGACTGACTTTGAgCACAGGATCCCTAAGGACCAGTGGTGGCTGAAACTGCGGCCTATCCTAAAGATCCTGGCCAAGTACCAGATCAGCCTGGACACTACAGAGAGAGCCAGCCTTGAGCACATCatccaccagaggggcaagAGCCACTGAGCCCTGCCCCaggaaggggagaggagaggagatgaGAGTAGAAGAGAGAAGACAGAAGAGAGAAGATGAGAGGAtgagctgtctgtctgtttaatgAAAGAGAAGGTGTctctatttaaacacattaaaagtgTCTAATAAGCAA

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00850 pfkA, PFK; 6-phosphofructokinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65199 lncRNA upstream 297391 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 508193 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 670119 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 672713 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 674398 13309616 ~ 13310773 (+) True G51968
TU65363 lncRNA downstream 122474 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 536626 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 546883 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 554706 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 556432 14562445 ~ 14562710 (+) True G52374
AMCG00008883 mRNA upstream 1541 13957368 ~ 13983630 (+) True AMCG00008883
AMCG00008884 mRNA upstream 36181 13942823 ~ 13948990 (+) True AMCG00008884
AMCG00008886 mRNA upstream 63544 13906302 ~ 13921627 (+) True AMCG00008886
AMCG00008885 mRNA upstream 80416 13899291 ~ 13904755 (+) True AMCG00008885
AMCG00008880 mRNA upstream 162115 13815425 ~ 13823056 (+) True AMCG00008880
AMCG00008889 mRNA downstream 1585 14007598 ~ 14013737 (+) True AMCG00008889
AMCG00008893 mRNA downstream 83640 14089653 ~ 14092404 (+) True AMCG00008893
AMCG00008892 mRNA downstream 97338 14103351 ~ 14109000 (+) True AMCG00008892
AMCG00008898 mRNA downstream 107448 14113461 ~ 14141914 (+) True AMCG00008898
AMCG00008900 mRNA downstream 137193 14143206 ~ 14144894 (+) True AMCG00008900
TU65027 other upstream 675741 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 727531 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 760225 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 992679 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 1058377 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 475908 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 521805 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 786156 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 786331 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 801284 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032972 False 4870 mRNA 0.44 22 NC_007113.7 48119494 ~ 48171441 (-)