RNA id: AMCG00008889


Basic Information

Item Value
RNA id AMCG00008889
length 492
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00008889
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14007598 ~ 14013737 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTGATCCTGTTCCTCGCGCTCAGCCTCTCTCCCCTGGCTCAGGGGCGGAGCAgggGATCAGGCTCCACTCTGCCCATCTCTGACAGTGAGCTGCTGTCTGTGTCTGAGCTGCTTTTCTCAGTGGATGAGAACAAGGCATCCCCCTCCCAGCTGACCATCTCCCCCCAGACCCTCATCCCAAACTCCGAGACCGCCACCCAGCAGGATCTGTCCCCCAGGCCgtTGTTCAGCTATGTTGACAAGGCCCTGTTCTCTCGCCCCACCTTCTCCTCCTTTGCTGCTTTGCTGGACAATTATCATCGGAAAACAGGCGTGTCTGAGGCCTTCAGTCCCGTCCAGCTGCAAGAGCAGGTCACCTTCCTGCAGGCGGCCATCAGCCACACAGCCGTGGGACAAAAGCTGTACAACTTCCTAAACAGCAAAAGGTACCCTGATGTCCTGGGGATGCAGTTTAACTGGGATGGTTTCTTCAAGCAGCCCGGATAA

Function

GO:

id name namespace
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0004521 endoribonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65199 lncRNA upstream 319818 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 530620 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 692546 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 695140 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 696825 13309616 ~ 13310773 (+) True G51968
TU65363 lncRNA downstream 114750 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 528902 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 539159 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 546982 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 548708 14562445 ~ 14562710 (+) True G52374
AMCG00008888 mRNA upstream 1585 13985171 ~ 14006013 (+) True AMCG00008888
AMCG00008883 mRNA upstream 23968 13957368 ~ 13983630 (+) True AMCG00008883
AMCG00008884 mRNA upstream 58608 13942823 ~ 13948990 (+) True AMCG00008884
AMCG00008886 mRNA upstream 85971 13906302 ~ 13921627 (+) True AMCG00008886
AMCG00008885 mRNA upstream 102843 13899291 ~ 13904755 (+) True AMCG00008885
AMCG00008893 mRNA downstream 75916 14089653 ~ 14092404 (+) True AMCG00008893
AMCG00008892 mRNA downstream 89614 14103351 ~ 14109000 (+) True AMCG00008892
AMCG00008898 mRNA downstream 99724 14113461 ~ 14141914 (+) True AMCG00008898
AMCG00008900 mRNA downstream 129469 14143206 ~ 14144894 (+) True AMCG00008900
AMCG00008899 mRNA downstream 142083 14155820 ~ 14163655 (+) True AMCG00008899
TU65027 other upstream 698168 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 749958 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 782652 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 1015106 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 1080804 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 468184 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 514081 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 778432 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 778607 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 793560 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile