RNA id: AMCG00008890


Basic Information

Item Value
RNA id AMCG00008890
length 465
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00008890
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14041773 ~ 14042907 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGAATGCAGTTCTGCACCATCCTCCACGCTGCACGCTTACGGGGAGATGTATAGCTTCGAGAAGCGGCTCCAGACCTTCTCCGACTGGCCGTTCCTAGAGGACTGCGAGTGCACGCCGGAGCGGatggCACGTGCGGGCTTTGTGCACTGTCCCAGCCAGAGCGAGCCGGATGTCGTGTGCTGCTTCTTCTGCCTGAAGGAGCTGGAGGGCTGGGAGCCTCATGATGACCCCTGgCTTGAGCACATGAAGCGCTCTCCCCGCTGTGGATTCCTGACCCTGCAGAAGGACCCTGATACCCTGCAGGTGATTGAGTTCTTCAGACTGGAGCAGGAACGGCTTGGCACCTACATTAGGAAGATGGGTGGACAGAAGATCTCCCAGTTCCGGGATGAAGTGCACCTGACCCGGAAGAAGCTGCTGACCCTGTTCAGCAAAGACCCAGCCCGGAACCCAGTCTAA

Function

GO:

id name namespace
GO:0030953 astral microtubule organization biological_process
GO:0007507 heart development biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0090307 mitotic spindle assembly biological_process
GO:0030182 neuron differentiation biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0007058 spindle assembly involved in female meiosis II biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0051311 meiotic metaphase plate congression biological_process
GO:0043523 regulation of neuron apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65338 lncRNA downstream 35334 14005727 ~ 14006439 (-) True G52214
TU65263 lncRNA downstream 211458 13823113 ~ 13830315 (-) True G52157
TU65235 lncRNA downstream 264844 13771560 ~ 13776929 (-) True G52131
TU65103 lncRNA downstream 585921 13373383 ~ 13455852 (-) True G52019
TU65362 lncRNA upstream 84332 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 229067 14271974 ~ 14275087 (-) True G52296
TU65464 lncRNA upstream 318026 14360933 ~ 14365179 (-) True G52314
TU65458 lncRNA upstream 330684 14373591 ~ 14378330 (-) True G52308
TU65520 lncRNA upstream 470970 14513877 ~ 14514078 (-) True G52355
AMCG00008891 mRNA downstream 20270 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008887 mRNA downstream 144356 13891280 ~ 13897417 (-) True AMCG00008887
AMCG00008881 mRNA downstream 160282 13866654 ~ 13881491 (-) True AMCG00008881
AMCG00008882 mRNA downstream 201847 13831207 ~ 13839926 (-) True AMCG00008882
AMCG00008879 mRNA downstream 270383 13737882 ~ 13771390 (-) True AMCG00008879
AMCG00008904 mRNA upstream 341662 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008907 mRNA upstream 347282 14390189 ~ 14393018 (-) True AMCG00008907
AMCG00008911 mRNA upstream 449263 14492170 ~ 14495264 (-) True AMCG00008911
AMCG00008915 mRNA upstream 527545 14570452 ~ 14587950 (-) True AMCG00008915
AMCG00008916 mRNA upstream 563069 14605976 ~ 14612227 (-) True AMCG00008916
TU65310 other downstream 57880 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 92682 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 355036 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 716546 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 732348 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 1442475 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1794082 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1798757 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1798757 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1914760 15957667 ~ 15963617 (-) True G52834

Expression Profile