RNA id: AMCG00008892



Basic Information


Item Value
RNA id AMCG00008892
length 789
RNA type mRNA
GC content 0.65
exon number 4
gene id AMCG00008892
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14103351 ~ 14109000 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCCCAGCCCCAACGCTCTGCCCGCTCCTCCCCAGtcctccagcagggggagcccTTACTCTTGCCCCACCCACCTCAGGAGTGTCCCCCGGCCGCCACTCCAACAGCCTTGTCCCCCGGCCTGAGGCCTCTGCACTGCCCAATGGGGCCCCCTCCATGGCGGCTCCTACTCCCCCACCCAGCGCCAGCCCACCAGAGTCTGAGGAGGACAAGGCCAAGAAACTGCTCTACTGTTCTCTGTGCAAGGTGGCTGTCAACTCGCTGTCACAGTTGGAGGCCCACAACAAGGGTACCAAACACAAAACGATCCTGGAGGCAAGGAGTGGTCTGGGCCCAATCAAGGCATACCCCCGGTTGGGGCCGCGGCCCAGCGCAGAGCAGGGGGGGGGTACCCAGGACCCCGACTCTCAGGAACGCACCTTTCACTGTGAGATCTGCAATcaCATATCCAGTAGGCGTCACCGGGATGGAGTTGCTGGGAAGCCGAATCCCCTCTTGACTCGGCACAAGAAGCACCGTGGCGCCGACCTCACGTCCTCTCTGTCCTTCCCGAAGGATCTGCCGAAAGCTCTGGGAGCCGGACTGTTGCCCAGCCCACTAGCTGTTGCTGCAGCGATGGCAGCTgctgcctcctcctccccacTGGCTCTGCGGGCGGCTGCCGGCGCTGCcccccaccaccatcaccaccaccacctgctGCAGGGCCCGCCCCTCAGCCACGCCCTGCTAAGACCTGCCCCCGGGCCCATCCGCACCTCACACGGGCCAATCCTCTTCTCCCCTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65199 lncRNA upstream 415571 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 626373 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 788299 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 790893 13311329 ~ 13312458 (+) True G51969
TU65028 lncRNA upstream 792578 13309616 ~ 13310773 (+) True G51968
TU65363 lncRNA downstream 19487 14128487 ~ 14128691 (+) True G52234
TU65529 lncRNA downstream 433639 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 443896 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 451719 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 453445 14562445 ~ 14562710 (+) True G52374
AMCG00008893 mRNA upstream 10947 14089653 ~ 14092404 (+) True AMCG00008893
AMCG00008889 mRNA upstream 89614 14007598 ~ 14013737 (+) True AMCG00008889
AMCG00008888 mRNA upstream 97338 13985171 ~ 14006013 (+) True AMCG00008888
AMCG00008883 mRNA upstream 119721 13957368 ~ 13983630 (+) True AMCG00008883
AMCG00008884 mRNA upstream 154361 13942823 ~ 13948990 (+) True AMCG00008884
AMCG00008898 mRNA downstream 4461 14113461 ~ 14141914 (+) True AMCG00008898
AMCG00008900 mRNA downstream 34206 14143206 ~ 14144894 (+) True AMCG00008900
AMCG00008899 mRNA downstream 46820 14155820 ~ 14163655 (+) True AMCG00008899
AMCG00008896 mRNA downstream 118717 14227717 ~ 14245887 (+) True AMCG00008896
AMCG00008895 mRNA downstream 141246 14250246 ~ 14253618 (+) True AMCG00008895
TU65027 other upstream 793921 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 845711 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 878405 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 1110859 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 1176557 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 372921 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 418818 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 683169 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 683344 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 698297 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile