RNA id: AMCG00008899


Basic Information

Item Value
RNA id AMCG00008899
length 2637
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00008899
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14155820 ~ 14163655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGAGATCGGCTGGAGGAATGTGACGCGGATTCTAGTGTACACCTCAGACGACACCTTCCACACGGCCGGGGACGGCAAGCTGGCCGGCATCTACCTGCCCAGTGATGGCCGCTGCCACCTGGATGCCGGGGAGTACAAGAGGAGCACTGACTATGACTATCCTTCTGTGGGTCATCTATCTCAGATCCTCTCATCCCACAACATCCAGCTGATCTTCGCCGTAACGGACAAGAGTGTCCCGAGCTATCGGgCTCTCAGTCAGCTGATCCCACAGTCGGTGGTGGGGGAGCTGAAGGAAGACTCCAGCAATGTGGTGCAGCTCATCTCTGATGCCTACAAGAGCCTGTCTTCCACCATCTACCTGGAGAGCCAGGGGGCCCCGCATGGCCTAGACATCACCTACGACTCGCACTGTGGAGGGGGGCGCTCTTTGCTGGGACAGCAGCGTGGAGAGTGCACTAACATCACCATTGATCAAGAGatCAGCTTCATGGTGACGGTGTCCagctctgcctgcctgtctggcCAGCACAAATTCTTCATCAAGCCCCAGGGTTTCAGTGAGCAGCTCCAGGTTACTGTGGAGATGCAGTGCGACTGCAATTGCCAGGACCTTCAGCCACGGCATGAATTCTGCAATGGAAACGGGACGCTCAACTGTGGTGTCTGCAGCTGTGACCAAGGGCATCAGGGGagaaagtgtgagtgtgtgaaggAGATGGACAGGCCAGGGGGTGAggcagggggcggggggggcagcGGTGGTGCTGACCTGTACGCCTCCTGCCGCGAGACCAACACATCGCAGCTGTGCAGTGGACGCGGGGACTGCGTGTGCGGGCAGTGCGTGTGCAGGGGGGTGGACGTGCGTGGGACCTACTGCGACTGGCACGGCAGGTGTGACTGTGGGAAATGTGTCTGCGAGCCGGGCTACAGTGGCGCAGCCTGCGAGTGCCCTGATGCCCAGACAGAGTGCAAGGGTCCAGACGGAAAGCTGTGCAGTGGGCAGGGGCAGTGCCAGTGTAACCGCTGCCAGTGCAAGCAGGGATATTACGGCCAGTACTGCGGATACTGCCGACACTGTGACCCCTGTCTCACACATCGTGAGTGTGTGAAGTGCCATGGAACATTGAAGGACTCCAGTGATCAGAACTGCAGCGCCCTCTGTGGTGAGACTCTGGTGAAGCGTGTGCCGTCTGTGCCGGGGTCCTTGTGCCGTGTGGAGGGCTTTGTCTTCAGCACGCAGGAGAAAGACAACGCGGTGCACATCCAGTACGCTGAGGCACCCAatGTGATTGATACGACAACCATGATAGTGGGCAGCTCTGTCTCCAGCATCATCTTCATCGGCCTCATCCTCATCATCGTGTACCGGATACTGTTGGAGCTGTACGACCGCCGCGAGTACCAGCACTTTATCAGGGATCAGAAGAACATGAAGTGGAAGGAGACTCAAAACCCTCTCTTCCGGGACGCCACCACCACCACGGTCAACCCCATGTTCAATGACAGTTAGACAACACCCCCATATGACAGAGGATGGACCTGCAATTCCAGAGGACATTAGGTTGCTGTTTCTACATCCTTATAGTTGGGATTGCATCCAAGATGAGGGAGAAACGGGAGAGAGGAGCAAACAACTTAACGCAAAACACAATGGCTCACAACACAATGCAGCACAGCCCAGAAACCTTCAGTGCAGAGGGGCCCAGTCCAGCCTACATCCTGCTGTCCATGAAACTCCTGTTGCGTGGTGGCTTAACTGGGAGTCAGGAGTCCACCCCATTTGTGTCACCTGAACTGAAGACTGGGCCTGTGGCACCAAcactttctctgtctgtgttgtcCAAACCCAAGTCACATCAGTCTAACTTCACCATCGCACCATATGACTGATCTGCTGTGTCCTGTAATCTTATAAAGCAGTGGTctccaatcctggtcctggagatccccaatccacttaatctGATGTGTCACCTAAAGTCActaatttctaaatactgggaacacatgagagttattaatcaattaagcaattcaacCAAGGGAATTATTGAAATCTGAAGGTATTCAGATGGTTGCTCCAGTGgtttctaaaggactgaatttacAAACCCACCTGCTTAATTACTTTGAAATACTTTCAGGTGTTTGAAAATTTGTGATAGAAGTGTGATCTCCAAAAACTGCTGGGCTATGCAGTACCAGGAATGGAGACCACTGTTATAAAGCAATGATGATGTGGATGCATGtcagtctaataataataattattattattagactgaCATGCATCCACATCACAGTGgatgttaataattataataattattataattatcaacattgcatttaacatttaacatcgcatttgatttaatttgtctgtatttaaattaataaagcacAACAATCTCTTTAACAATAACTTAAACTTCAGACCTGTTTTAAATGCAGCTATAATAAATGTCTTTGCAGAAACCACTGTCTGCATGTGCAGTTTCTGTGGGGTGCATTTCCTGTATGTGATGGCTGACTGAGAGCTGGTGGGTTGTGTTTttgattataaaacaaacagtacAGAAGGGTATCCATCCCTGTTTCTGGAGAGACACCGTACGGTACAGCAGGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65363 lncRNA upstream 27129 14128487 ~ 14128691 (+) True G52234
TU65199 lncRNA upstream 468040 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 678842 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 840768 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 843362 13311329 ~ 13312458 (+) True G51969
TU65529 lncRNA downstream 378984 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 389241 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 397064 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 398790 14562445 ~ 14562710 (+) True G52374
TU65545 lncRNA downstream 412781 14576436 ~ 14576682 (+) True G52377
AMCG00008900 mRNA upstream 10926 14143206 ~ 14144894 (+) True AMCG00008900
AMCG00008898 mRNA upstream 13906 14113461 ~ 14141914 (+) True AMCG00008898
AMCG00008892 mRNA upstream 46820 14103351 ~ 14109000 (+) True AMCG00008892
AMCG00008893 mRNA upstream 63416 14089653 ~ 14092404 (+) True AMCG00008893
AMCG00008889 mRNA upstream 142083 14007598 ~ 14013737 (+) True AMCG00008889
AMCG00008896 mRNA downstream 64062 14227717 ~ 14245887 (+) True AMCG00008896
AMCG00008895 mRNA downstream 86591 14250246 ~ 14253618 (+) True AMCG00008895
AMCG00008897 mRNA downstream 90644 14254299 ~ 14271663 (+) True AMCG00008897
AMCG00008894 mRNA downstream 115685 14279340 ~ 14281471 (+) True AMCG00008894
AMCG00008901 mRNA downstream 129754 14293409 ~ 14308544 (+) True AMCG00008901
TU65027 other upstream 846390 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 898180 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 930874 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 1163328 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 1229026 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 318266 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 364163 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 628514 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 628689 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 643642 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile