RNA id: AMCG00008901


Basic Information

Item Value
RNA id AMCG00008901
length 5212
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00008901
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14293409 ~ 14308544 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCTCCTCTTCTCACTCTATATCACAGTTACATTGCAAGCTGTTTGCAAAAATGGGGGACGACCGACCTTTCGTGTGCAACGCCCCAGGTTGTGGGCAGAGATTTACCAATGAGGACCACTTGGCTGTCCACAAACACAAGCACGAGATGACACTAAAGTTTGGCCCCGCCAGGACAGACTCCGTTATTATCGCAGACCAGACGCCCACACCCACACGCTTCCTGAAGAACTGTGAGGAGGTGGGGCTCTTCAATGAGCTGGCCAGCTCCTTCGAGCAGGAGTTCCGCAAGGCTGTGGAGGACGAGGAGGACAAGCGCACCAAGACCGTGTTGCCCCCGCCTCCCACAGGTGCCCTGGACATGACCCTGACACCCTCTTCAGAGGTGAAggtgaaggaggaggagcctgTGGAGGTCGATGACTCCTCTCCCCCAGACAGCCCTGACTCCACCTCCAGCATGTCCGACTGCACAGAGGAGACTCCCCCCAGGCCAGTGATGAGCTCTGCACCCACACCCACCATCGTGCGGCCCGGCTCGCTGCCCCTGCACCTGGGCTACGACCCTCTGCAGCCCACCCTGCCCTCCCCCACCTCTGTCATCACACAGGCGCCCCCCTCCAACCGCCAGCTGGGGTCAGTGCACTGTgctctgtctCTTGCCAGGCCTGTGTCCATGGTGCCCAACATTCCCGGGATCCCCGGCCCCCCGCTGGGGAGCAGCAGTGGTTCATCCTCGCCCTCCGGACACATCCCTCACTCCGAGGCCAAGATGAGGTTGAAGGCGGCCCTGTCGCAACAGGGCCCCCCGGCCCCAAATGGGCTTGGCATGGCGATGGGCTCCAGTCCAATGGTGCCTCAGAGACAGGAGCAGAGCCAGCTGCTGGTGCAGCACCCTGACGCACCCTCCCCTGCACAGCCACAGGTGTCCCCAGCTCAGCCCACAGgggggcggcggcggcgggCCGCGGAGGATGACCCTGACGAGCGGAGACAGCGTTTCCTGGAGAGGAACCGTGCTGCCGCCTCGCGCTGCCGCCAGAAACGCAAGCTGTGGGTCAACTCCCTGGAGAAGAAGGCTGAGGAGCTCACCTCCATGAACGTGTTTTCATTGTACTCATCTCTTCAGCTGTTATTCATGGGCCCCTGAGAGGAGAGCCCCAAAGACCCCTGCGAGCAGACGGGCTCTCCTGCCCCGGTCATCCAGCACAGCTCTCTGTCATCCAGCCCTGCTGCAGGTCCCCAGAACGGAATGAGCGCGCGCGCCGCAGCCGAGGCAGTGGCCATGTCCGTGCTGGCTGGGATGGGCAGCCAGCGCTCCGAACCCGGGCCTGGCCCAGCCCACGTCATAATGGCACCACAGTCTCAGCCTGCGGCCAGATGATAAGCGCAGCGCTGCCTCCCGGTCGCCAAAGCCATGGAACTCACCCACTGGCCAGAGAcacaggagcaggaggagatgAGGAAGGGCGGGGTAGAGGGCTGGTTGCCTGGATGCATCTTTCCCCTCCACTCGTTATCCCTCTCTCAGCTCGCCCATACCActcctctgcccccccaccaagGACTCCCAATCCTCAGTCCCACCCTGACCCTGACCCATGTCCCTGGCCTGGAGCACAGCGGCTACTGGGACACAACCTGGGACAACTACGGAGCTTCCTGTCAATGTTTGACTGGACTCCCTACACCCCCGAACCCCCTGTATCTGCTCTCACTGGACTGTATGACTGCAGAACTctttctgaacacacacacacacacatatatacacacgctcacacactcactcatactgacactcactcactcacaaacTTACTGAGGTTATCTgttctgttgttatttttgtgttttgtttttggtatattTTTCTACTTCCCCTCACTCCTGTTGATCAGGTGAAGAGTGAAGGGGAGCCCGGCCCTCGCCCCCAGCGGCACTGCTGGGTGTGATGATAATACAGCAGTCAGTCACACCACACATACCCCCCACCTCTCTACACATACAACAGGTGTCCTGTTGTCATGCTGCCCCCTGTCTGTAATAGGAGGAGGTTCAATAGGAGCCTCTCGGTCTGCTTTTGGCATCGTccatgttgctgctgctgctcggACCCTCTCTCCTCGCTGGTTCCTATGAACCTGCAGAAATACAGGAATTACTTATGTGCATGCATGCGTGAGTGTGTAGGCCCATCCCGCGGAGCCCGGCACCGGTCCTGGGGAGAGCTGGGTTTGCccaatttgtgtctttttgtctCAGACCCAGTTTATACACATATCTGtcccagtgtgtgtgcatgtgtgtgtatatatagatatgcacATGTCATTTATGTATTGTCGTAAATTGCTATATACAAGTTAAGCGTTTAGATGCCATATGGTGAGCACTGACCCTCGGTTTGACTTATAAAGCTTGgtgaccaaaaacaaacaaacagaatcaTGTTTCTTCACTACCACAGATGGTATGAATTCTGATAATGAATTAGTGGAAGTAaagatgtgttattttattatttatttggctgatgCCTCCTGTTGGGTAGGAAACTAAACAATGTGCGAAGGATACATACTGTATAAtgatatgttaaaaaaaaaaaaaaaagtgtacagttttacagtttGGCGACCCACCGTGGCTCAGTGTATCTGTATTATATGGCATTGGATATGGGAAAAGTAGACTACTTTCCACCCTCCCCCCCAGCTGATATTTGTCAGCATACCAAGCTTTTAAAGGGTTCAGCTGAGACCTGCTGGGGGTGCAGCAGCCCCTGCATTTTGTGCTGTGGGAGGCTCAGGCTCCCTCTCGGCGCTGTGTGCCGGTGCTCTGCTCactttttgcattgttttgtaagGAAACGCATATAGGTTTCCAAGGGGCCTTAATCCGCACTCCCCACCTTCTACCCCACGCTTCCCTCCCACTCCTGCTTCAATACCAGCCACTGCATCTCACTTTAACTATTGCATCACACTTGTAGACGcttacagttaaaaataaaggtAGAGAATTGTGGTTCTCTTGCCAGTCCCTGGGGTGATGATGGAGGTGAAAGCAAATCAGTGTGTCTATCCATTCTGTATCGGGAGAGATGGATAGAAGGGCCCATGCAGCATCATTCAGCATTGTGTTCAGATCCTTATTTCTGCTGGGGAAGCTGGGACAGATCCCTCTCCACCTGGCAGATGTCATTGTGCTGCAGCAGAAACTATTGGTCTGTGAGTGACAGACCTGCAGCTTCCCTCACTCTCACGTACAGTCCCTAGCTCTCtatctcacacactctcactctcaccgTCACTCACTCATTTTCATATCCACTATCCCACTCTGGTGTCAGTCCAGGTGGGTGACTGCTTACTGTGGCGCTGCAGTGCTGTCCTCTCTGGGTGGGCGGGGGGTGCTGAGAGGCACATGGGACCCGAGGCCCCTGGAAGCTCCGAAAGGCCATCGTCCTCCACAGAGCAGCAAAACAAACGAACCACAGCAACACAAACTTTTAACTCCGCTGTCATATTAACAGTTGTCAttggcactttttattttttaagtttgaattTTACTTTTAACTGCCTGCTATTGTTAGGACTATACAAATACATGCTTATAATATATGCTTTGCTggtatataaatgtttttttttttggttgtcaTCATGAAATATAGAAacgcattgttttcttttgtgtctgttttctaaagttcagtttttttttttcttttttttttctttcctggttTCACAATGTAACCAATGTgacttgttatttttaaacagacaaaaaaaatactaattccttgatgatttaattttattttacttttgagtTACCaattgtgtgcctgtgtgtgtatctgagtatgtatgtgtgggtgtgtgtctgtatgtatatacctgtgtgtatgtgtctatatgtgcgtgtgtttgtataAATCTGtctatgtgtgagtgtgtgtgtgagtgtgggtgtcTCACTtgtcactgtgtctctctgggTGAGTGTgtcttactgtgtgtgtgtgtatatgagcGAGCATGTGtcttactgtatgtgtgtgagtgagtgagcgcGTGTcttactgtgtgtctgtgtgtgtatgtgtgtgtgtgagcagggtGTTCTGCTCTGCTCTAGAAAGGCCCTGTATCCCTGTGCCCTCTCACCTCTGCACTCTCCCTTGTTCaatcccaacataaaaccatgtttaatttattatgcaatatatattgCAAGGGAGAAGAATGAGAGTGAGTATATCAGTAACTAACAGCGATTTCATAACACTGTATATACCCCCAAGGTCAGCCTCAGCCCAGTGACTAAAGATAAAGACTATAAACTCCACTGCAGATACCGTCTAATTTTCCTGTTCGTGTACAAATCTATTTTGTGTGTAAGTCGCACTCCCCTCTGTCAGTCTTTTCtcaatgtactgtacatatgtgTACCATATATATCTACCTTTTTTCATGCATGCTGAAGTGGGATACTCTGAACACTTATCGtgctgctgttttaattaaacaaacaaaccaaaaagagTTGCCGTTTTTTTAGAAATCATGCCGTTTGTGGGGCGTGTCTCCTGTCTTCAAGAAAACCTGTTTCTGTGGGGGGAATGTGGGTTCAGGTGTGTGGGTGTGATTATACAGAGGCTTTCAGTTCTAGGGACCTCAATGCCAAACATGCAGTGCGCTCTGTTTCAATGATCTGTCTGTGTTGATCACCTgtggtatttaaatatatggtgAAGTTCTTTCCAGACCCCAGACTGGATGTGAGATGAAgaacaaatgaatacagaagGCTCATCCTTGTGACCCTGGGGTCTAAAACGGGGTTGTGATTGAGTCCATTAATGTCATTCAGCCTGGCATCGAGGGTTCATTTCTGAGATTCACgttttttccctttgtgtttgaaaatgttttcaatcattttgtatgAGTGTGTTGTGAATGGTTGTATTCGCTCGCTCTGGATTGTATTGAGCGCAGGGTATTGGCTAAGACCGACACGTTTGCGCAGTTATGAATGGGAATTCCCCGTTGCTAGGGTAGAATCTCACGTAGCTCCTGAGTGCAGTGCTAGATTTGGCCAACAGGTGGCGCGAGTGGCGACCAGGCTGATTTTGGTTTCACTCATGAACGGTGCTTTGTGGGATTTGTAGTCTTTcagtttacttaaaaaat

Function

GO: NA

KEGG:

id description
K09045 ATF7, ATFA; activating transcription factor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65363 lncRNA upstream 164718 14128487 ~ 14128691 (+) True G52234
TU65199 lncRNA upstream 605629 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 816431 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 978357 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 980951 13311329 ~ 13312458 (+) True G51969
TU65529 lncRNA downstream 234095 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 244352 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 252175 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 253901 14562445 ~ 14562710 (+) True G52374
TU65545 lncRNA downstream 267892 14576436 ~ 14576682 (+) True G52377
AMCG00008894 mRNA upstream 11938 14279340 ~ 14281471 (+) True AMCG00008894
AMCG00008897 mRNA upstream 21746 14254299 ~ 14271663 (+) True AMCG00008897
AMCG00008895 mRNA upstream 39791 14250246 ~ 14253618 (+) True AMCG00008895
AMCG00008896 mRNA upstream 47522 14227717 ~ 14245887 (+) True AMCG00008896
AMCG00008899 mRNA upstream 129754 14155820 ~ 14163655 (+) True AMCG00008899
AMCG00008903 mRNA downstream 20787 14329331 ~ 14361438 (+) True AMCG00008903
AMCG00008902 mRNA downstream 58417 14366961 ~ 14378115 (+) True AMCG00008902
AMCG00008908 mRNA downstream 105805 14414349 ~ 14414735 (+) True AMCG00008908
AMCG00008906 mRNA downstream 111274 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008905 mRNA downstream 159215 14467759 ~ 14478114 (+) True AMCG00008905
TU65027 other upstream 983979 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1035769 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1068463 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 1300917 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 1366615 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 173377 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 219274 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 483625 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 483800 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 498753 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044201 True 2383 mRNA 0.52 11 NC_007134.7 27446929 ~ 27479558 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_09186493_09193971.mRNA True 2361 mRNA 0.45 11 CI01000340 9185697 ~ 9194027 (-)