RNA id: AMCG00008903


Basic Information

Item Value
RNA id AMCG00008903
length 5063
RNA type mRNA
GC content 0.61
exon number 39
gene id AMCG00008903
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14329331 ~ 14361438 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCAGTGTTGGCCTCTGTGCCCAGTGGAAGGGGCAGCTGTGTTCCCGCTGTGGAGCTGGGCATGGTGACATCACACAGAAGGGCTACGAGAAGAAGAGAGCCAAGCTGCTCGCCCCCTACATCCCCCAGACTGCAGGGCAAACTGAGCTAAACACCACCGGCAAAATACACCCCAAAGGACCAGACCCGAGAGACCGCGAGATGCGCATTTTAAACGATAACTCGCGCTGTGACTGGAgTGCTTTGTGCTGTCGTGTGACTGTGTCCTATGTCTACCCAGGAGTGGAGCCGTCCCTCCAGACTGACCAGCGGAACCAGGGGCCCAGCGCTGGCCCACAGCCCACTGCCGCCCCGCGCCACCACCGTTCCCGTGCCGGCGGTGCCAGGGATGACCGCTATCGATCAGatatCCACACAGAGGCAGTCCAGGCCGCGCTGGCGAAGCACAAGGAGCAAAAGATGGCTCTGCCCATGCCAACCAAGAGACGCTCCACCCTCGCCCAGTCCCCCATCGACCCCTGCACCCCCCCAGacaccTCCTCAGCTTCCGAGGACGAGGGCTCTCTCCGCAGACGGGCGGCCCTGACTGCGGCTCTGTCCCAGGGGCTCCAGACCTCTGACTGCTGGATCAACCACTCCCTGCAAggctcctccacctcctcctctgcctcctccacaCTGTCCCACGGGGAGGGCCGCTCCCAGGGTGCTGCATTGGCTGATGTGCTGGCCCACACACGCTTAGAGAGTGGCAATGTGCCCCCTGAtgtcacctcctcctcctccgcccaGGAGAGGACACCACGCTTTGACCTGCCCCCCCCTGCTGCTGTCAGGGGCATGACCCGCGGCCAGAGCCGAGCCAGCATCATGGACACGGCGGATGGTGTCCCAGTGAGCAGCAGGGTCTCCACTAAGATCCAGCAGCTGCTGAACACACTAAAGAGACCCAAGAGGCCACCACTCAAGGAATTCTTTGTTGATGACTTTGAGGAGATTGTGGAGGTGCCGCAGCCCGACCCCAACCAGCCGAAGCCCGAGGGGCGGCAGATCATCCCGGTGAAGGGGGAGCCACTGGGCGTGGTCAGCAACTGGCCACCGGCCCTCCAGGCCGCGCTGCAGCGCTGGGGCACTACACAGGCCAAGAGTCTCGCCCTCACCGCGCTGGATGTCACCGGCAAGCCACTTTACACCCTGAGCTATGGTGAGTGCCACAGCAACTGGGGGAAGCTCTGGAGCCGAGCTGTGAAGCTGGCCTACACCCTTCTCAACAAACTGGGCACCAAGAATGAGCAGGTCCTCAAACCTGGAGACCGGGTGGCGCTGGTGTACCCCAACAGTGACCCTGGCATGTTCCTGGTGGCGTTCTATGGCTGCCTGTTGGCGGAAGTGTTGCCAGTGCCCATAGAGGTGCCACTGTCTCGTAAGGACACGGGCGGACAGCAGATTGGCTTCCTGCTGGGCAGCTGTGGGGTCAGTCTGGCCCTGACCAGCGAGgctGGCCACGGTTGAAGTGGGTGGTGACCGACTCCAAATACCTGACCAAGCCCTCCAAGGACTGGCAACCCCACATCCCCACAGCCAACACTGACCCGGCCTACATTGAGTACAAAGCCACCAAGGAGGGCAGTGTGATGGGCGTAGCTGTGTCCAAACTGGCTATGCTGACCCACTGCCAGGCCCTGACACAAGCCTGCAACTATACTGAAGgagAAACGCTGGTGAACGTCCTGGACTTCAAGAAGGACATGGGTCTGTGGCACGGCGTCCTGACGagCGTGATGAACCGGATCCACACAGTCAGTGTGCCCTATGCTGTCATGAAGGCCTGCCCCATGTCCTGGGTCCAGAGGGTGCACATGCACAAAGCGCGCGTGGCTCTGGTGAAGTGCCGAGACCTACACTGGGCCATGATGGCACACCGTGACCAGAGAGATGCCAGCCTGGCCTCCCTGCGCATGCTGATCGTGGCTGATGGGGCCAACCCCTGGTCCGTGTCATCGTGCGACGCCTTCCTCAACGTGTTCCAGACGCAGGGCCTGAAGCCTGAGGTCATCTGCCCCTGCGCCTCCTCCCCTGAAGCGCTCACCGTCGCCATCCGCAGGCCAGGGATCCCTGGTGCACCCCTGCCCGCACGCGCCATCCTATCCATGGGGGGGCTGAGTTACGGCGTTATCCGTGTCAACACAGAGGACAAGAACTCTGCCCTCACCGTGCAGGATGTTGGCCATGTGATGCCCGGGGCTCTGATGTGCATTGTGAAGCCAGACGGGCCCCCCCAGCTGTGCAAGACCGACGAGATTGGGGAGATCTGTGTGAACTCGCGGGCGGGGGGGACACTGTACTATGGCCTGCCTGGCGTCACCAAGAACACATTTGAGgtgatTCCTGTGAACTCCAACGGTGCCCCAATTGGGGAGATCCCATTCGTGCGATCAGGGCTGCTGGGATTCGTGGGGCCGGGCAGCCTGGTGTTTGTGGTGGGCCGCATAGAGGGACTGCTGATGGTCAGCGGTCGCCGGCACAACGCAGACGACCTGGTTGCCACGGCGCTGGCGGTTGAGCCAGTGAAGACTGTGTACCGTGGCCGGATTGTGGTGTTCTCAGTCACGGTGTTCTATGATGAGCGGATCGTGGTGGTGGCTGAGCAGCGGCCGGATGCCAGCGAGGAGGACAGCTTCCAGTGGATGAGCCGTGTCCTGCAGGCGATAGACAGTATTCACCAGGTGGGTCTGTACTGCCTAGCTTTGGTTCCTGCCAACACCCTGCCTAAGACGCCGCTGGGGGGGCTCCACGTGTCCGAGACCAAACAGCACTTTCTGGAGGGCACGCTGCACCCCTGCAACATCCTCATGTGCCCCCACAGCTGTGTCACTAACCTGCCGAAGCCCCGGCAGAAACAGCCAGtgggcGTGGGGCCGGCCTCCATCATGCTGGGTAACCTGGTGGCAGGGAAGCGTGTGGCACAGGCAGCAGGGCGGGACCTGGGGCTGATCGAGGACCAGGACCTAGTGAGGAAGCACCAGTACCTGTCAGAGGCTCTGCAGTGGAGAGCTCACACTGACCCGGACCACATTCTCTTTGTGCTCCTAAATGCCAAGggagcTGCAATAGCCACAGCGACCTGTATTCAACTGCACAAGCGGGCAGAGAAGATCGCGGCAGCACTGACCGAGAAGGGCAGCATCAACACGGGTGACAATGTGGTGCTGCTGTACCCCCCAGgtctgGATCTGATCGCCTCTTTCTATGGCTGTCTGTACGCTGGCTGCATCCCAGTGACAGtgcgccccccccacccccagaacCTGGCCGCCACCCTTCCCACCGTGCGCATGATCATTGATgtcAGTAAGGCAGCCTGTATCTTGACCACTCAGACACTGATGAAGATGCTGAGGTCGAAGGAGGCAGCGGCTGCGGTCAACACCAAGACCTGGCCAACCATCATCGACACAGATGACCTGCCTCGCCGGCGCCCCCCCCAGGTGTACAAGCCCCCCACGGCTGAGATGATGGCTTACTTGGACTTCAGTGTGTCCACCACCGGCATGCTAACTGGGGTTAAGATTTCACACGCTGCAGTCAGTGCTCTGTGCCGTTCTATCAAGCTGCAGTGTGAGCTGTACTCCTCACGGCAGATTGCCATCTGTCTGGACCCATACTGTGGCCTGGGCTTTGTGCTGTGGTGCCTCTGCAGTGTGTACTCAGGGCACCAGTCTATCTTGATCCCTCCCCTGGAGCTGGAGGGGAACCTGGCCCTGTGGCTGTCTACCCTCAGTCAGTACCGCGTCAGGGACACCTTCTGCTCCTACTCTGTGATGGAGATGTGCACCAAGGGGCTGGGCAACCAGACTGAGGCCCTGAAGGCACGCGGGGTGAACCTGTCATGTGTACGGAGCTGTGTGGTGGTGGCAGAGGAGCGGCCCCGCCTGGTGCTCACTCAGTCCTTCTCCAAGCTGTTCAAGGACCTGGGCCTGTCTCCCCGCGCTGTCAGTACCTCCTTTGGCTCGCGGGTCAACCTGGCCATCTGTCTGCAGggtaCGACTGGTCCAGACCCCTCCACAGTGTATGTGGATATGAAGTCACTGAGACATGACCGgGTACGTCTGGTGGAGAGAGGGGCTCCTCAGAGCCTGCCACTAACAGAGTCTGGgaagatcCTGCCGGGCGTCAGGGTGATTATAGTGAACCCAGAGACCAGAGGACCACTGGGAGACTCTCACCTGGGGGAGGTGTGGGTGAACAGCCCCCACAGTGCTAGTGGGTATTACACCATCTACGGAGACGACAGCCTACAGGCAGACCACTTCAACACGCGGCTGAGCTTCGGGGACACGCACACGCTGTGGGCACGCACTGGCTACCTGGGCTTCGTCAAGAGGACCGAGTTGCTGGACGCCAGTGGAGACCGTCACGACGCTCTGTTCGTGGTGGGCTCACTGGATGAGACTCTAGAGCTGCGCGGGCTGCGATACCACCCCATTGACATCGAGACGTCCGTGTCACGCACACACCGCAGCATCGCAGAGAGCGCTGTGTTCACCTGGACGAACTTGTTGGTCGTGGTGGTGGAGCTGTGCGGTTCGGAGCAGGAGGCCCTGGACCTGGTGCCGCTGGTGACGGACGTGGTCCTGGACGAGCACCACCTGATCGTTGgcgtggtggtggtggtggaccCTGGGGTCATTCCCATCAACTCGCGGGGGGAGAAGCAGCGCATGCACCTGAGGGACAGCTTCCTGGCCGACCAGCTGGACCCCATCTACGTGGCCTACAACATGTAATAAACATGCTCCCCCCCTTACCCCccatctacacacacactcccacctGTACCTGCCAGGCAGCACTTGGGGGATAAGACTGGAGGGGGGATTAGGTCACACCTGGACTACACCTGGGCAAGCATCTGGGATACCCGGGGCCACACAGCCACAGACCCTGGGGAAACCGCATTCTTCAGCTCTTTGTGGGAGGGGGTCACAAGGGTTGAATATTACAGGGGgtgagtgggtggggggggaaggtgggctttgtgtttttttttttttttgtct

Function

GO: NA

KEGG:

id description
K21059 fadD29; 4-hydroxyphenylalkanoate adenylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65363 lncRNA upstream 200640 14128487 ~ 14128691 (+) True G52234
TU65199 lncRNA upstream 641551 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 852353 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 1014279 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 1016873 13311329 ~ 13312458 (+) True G51969
TU65529 lncRNA downstream 181201 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 191458 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 199281 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 201007 14562445 ~ 14562710 (+) True G52374
TU65545 lncRNA downstream 214998 14576436 ~ 14576682 (+) True G52377
AMCG00008901 mRNA upstream 20787 14293409 ~ 14308544 (+) True AMCG00008901
AMCG00008894 mRNA upstream 47860 14279340 ~ 14281471 (+) True AMCG00008894
AMCG00008897 mRNA upstream 57668 14254299 ~ 14271663 (+) True AMCG00008897
AMCG00008895 mRNA upstream 75713 14250246 ~ 14253618 (+) True AMCG00008895
AMCG00008896 mRNA upstream 83444 14227717 ~ 14245887 (+) True AMCG00008896
AMCG00008902 mRNA downstream 5523 14366961 ~ 14378115 (+) True AMCG00008902
AMCG00008908 mRNA downstream 52911 14414349 ~ 14414735 (+) True AMCG00008908
AMCG00008906 mRNA downstream 58380 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008905 mRNA downstream 106321 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008909 mRNA downstream 127095 14488533 ~ 14492579 (+) True AMCG00008909
TU65027 other upstream 1019901 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1071691 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1104385 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 1336839 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 1402537 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 120483 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 166380 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 430731 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 430906 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 445859 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_09150825_09173139.mRNA True 5303 mRNA 0.51 37 CI01000340 9150294 ~ 9173139 (-)