RNA id: AMCG00008907


Basic Information

Item Value
RNA id AMCG00008907
length 1671
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00008907
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14390189 ~ 14393018 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgGCCCACAGGTTGGGAATCACTGCTCTATTCTAAATCAGGATTTCGCCACTATGCTTGTTAGGATCTCGACGGCGCCACCCAGTGGGGGACGGTTAAATAGCATGTGCAACGTGgtgtttccaaataaataatacgtAGTGCACAGGCGCCACCGGAAGAATGCCACCAAGGAACAGGGTTTATAGCTAAATACACAAGTCGAAGTCCGCCTGGCACAGACATATTCCGTTTAGTCTGTAAAGATGTCGATCTGTATGGGAATATGCACGCTTCTTTTCAAAACGCTGTGCCTACCACTGCAGCTGATGGAGCTGGTAGGGCTTTGCGGATTGTACAAGCGCGTATTCCCCTTTCTCATGTTCAAGATCTCGGCCAACTACAACAAGAAAATGCACGAAAAGAAGAAGGAGCTCTTCGGCAACCTGTCGGAGTTCGCTAGCTCCGACGCTGGCCCGCTGAGGCTGCTGGAAATAGGCTGCGGGACCGGGGCGAACTTCCAGTTCTACCCCCGGGGCTGCAGAGTCATTTGCACGGACCCCAACCCGCACTTTGAACGCTTTCTGCACAAGAGTATGGCCTCCAATTCCCACCTGCGGATGGAGCAGTTCGTGGTGGCCGCCGGCGAGGACCTGAGGTCGGTAGGCAGCGGCTCCGTGGACGCGGTGGTGTGCACTCTGGTGCTGTGTTCCGTCCGCAGCACGCACAGAGTGATACAGGAGGCGTACCGTGTCCTGCGGCCTGGCGGTGCTTTCTTCTTCCTGGAGCACGTGTTGGCGGACCCCTCCTCCTGGACCTACTTCTTCCAGCACGTCCTGCAGCCGCTGTGGCGATACTTCGGCGACGGGTGCGAGCTCACCAGGCAGACCTGGAAGGATTTGGAGGCCGCTGGCTTCTCGGACCTGAAGCTGAGGCACATCGAGGCACCGCTGTCGCCGCTCATAAAGCCTCACGTCATGGGTTACGCGGTTAAATAACGGAGGCGGATTATTCCCCCATTTGTGAAGTATCTTTTTTTAGTGACCCCCGTGTGAATGTTGAATCCGTGATTTGTCTATGTGATCATCTTGTTAATCGTTTTGTTAATCAGAATTAAAAATCCTAGACGGCTTACTAAACGTTATACGTATTAATGGTGACGTCTCGTACGTATATATTTGCTGCTTGACCAATGGTGTtgaatttataatataaattataacaaTGGCACATTTCCCATTGAACCCTGTGGTGTAGAAGAGTGACGCTATATTGCACTACTAGGCTACCTACAGCATATTACATGTGTGACTGatgcaataaaataagttaGCCGACAGATTTGTCCTGACCCTTTTTGTACCAACCACAGCTATTCAGTACAAGAAAGTTATCCCGCAGTTATATAAACGGGTAATAAACACTAACCCACGGTCTCAATCCCACTTCCCTGAGTAAAACGTGGACTATTGTGTTTATCAAGTAGACCTAAAACTTGCCCGTACAATGTTACTTTGTATCAAGGTGCCTACTGTCTGCTCCCATTTTAACAGTTCTTGGTCGGGTGTGAGATAAACTAGTACTATGGGCGCAAATTAGAAGTAacgaattaaaaataaaatgtatcgtAAATAGGAAAAcgtaaagtaaagaaaaaaatggatgttgagattaaaaaaaaaaaaaaagcaaa

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65458 lncRNA downstream 11859 14373591 ~ 14378330 (-) True G52308
TU65464 lncRNA downstream 25010 14360933 ~ 14365179 (-) True G52314
TU65441 lncRNA downstream 115102 14271974 ~ 14275087 (-) True G52296
TU65362 lncRNA downstream 262688 14127239 ~ 14127501 (-) True G52233
TU65338 lncRNA downstream 383750 14005727 ~ 14006439 (-) True G52214
TU65520 lncRNA upstream 120859 14513877 ~ 14514078 (-) True G52355
TU65530 lncRNA upstream 149048 14542066 ~ 14542499 (-) True G52362
TU65531 lncRNA upstream 149538 14542556 ~ 14545750 (-) True G52363
TU65555 lncRNA upstream 204949 14597967 ~ 14598418 (-) True G52387
TU65589 lncRNA upstream 300812 14693830 ~ 14712386 (-) True AMCG00008918
AMCG00008904 mRNA downstream 801 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008890 mRNA downstream 347282 14041773 ~ 14042907 (-) True AMCG00008890
AMCG00008891 mRNA downstream 368686 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008887 mRNA downstream 492772 13891280 ~ 13897417 (-) True AMCG00008887
AMCG00008881 mRNA downstream 508698 13866654 ~ 13881491 (-) True AMCG00008881
AMCG00008911 mRNA upstream 99152 14492170 ~ 14495264 (-) True AMCG00008911
AMCG00008915 mRNA upstream 177434 14570452 ~ 14587950 (-) True AMCG00008915
AMCG00008916 mRNA upstream 212958 14605976 ~ 14612227 (-) True AMCG00008916
AMCG00008914 mRNA upstream 260432 14653450 ~ 14666770 (-) True AMCG00008914
AMCG00008913 mRNA upstream 278423 14671441 ~ 14681624 (-) True AMCG00008913
TU65310 other downstream 406296 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 441098 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 703452 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1064962 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1080764 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 1092364 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1443971 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1448646 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1448646 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1564649 15957667 ~ 15963617 (-) True G52834

Expression Profile