RNA id: AMCG00008908



Basic Information


Item Value
RNA id AMCG00008908
length 387
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00008908
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14414349 ~ 14414735 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTGCACCCCTTCTCGCACCGCCCGGACCTGACAGCTTCCGCAAATTTACCCCGGAATCTTTGGTCAACATCGAGAAGCGCATCACCGAAGAGAGGAGTAAGAAGCCCCCCAAGCCTGACAGCAGTCACCGCGACGACGACGATGAGAACAAGCCCCGCCCCAACAGTGACCTGGAGGCGGGCCGCAGCCTGCCCTTCATCTATGGCGATATTCCTTCTAAGATGGTGGCGGTACCACTGGAGGACTTGGACCCTTATTATTTAAACGAGAAAGTGAGTGGCCCTAACCCAGTGACCCCACCACTATCCCCTTCCCACCACTACtcctcccactaccaccactacaGTCTGATACTTGTAACTCCTCCCTCTGAACCCCCTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65363 lncRNA upstream 285658 14128487 ~ 14128691 (+) True G52234
TU65199 lncRNA upstream 726569 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 937371 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 1099297 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 1101891 13311329 ~ 13312458 (+) True G51969
TU65529 lncRNA downstream 127904 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 138161 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 145984 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 147710 14562445 ~ 14562710 (+) True G52374
TU65545 lncRNA downstream 161701 14576436 ~ 14576682 (+) True G52377
AMCG00008902 mRNA upstream 36234 14366961 ~ 14378115 (+) True AMCG00008902
AMCG00008903 mRNA upstream 52911 14329331 ~ 14361438 (+) True AMCG00008903
AMCG00008901 mRNA upstream 105805 14293409 ~ 14308544 (+) True AMCG00008901
AMCG00008894 mRNA upstream 132878 14279340 ~ 14281471 (+) True AMCG00008894
AMCG00008897 mRNA upstream 142686 14254299 ~ 14271663 (+) True AMCG00008897
AMCG00008906 mRNA downstream 5083 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008905 mRNA downstream 53024 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008909 mRNA downstream 73798 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008910 mRNA downstream 125465 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008912 mRNA downstream 217782 14632517 ~ 14649949 (+) True AMCG00008912
TU65027 other upstream 1104919 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1156709 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1189403 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 1421857 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 1487555 12925238 ~ 12926794 (+) True G51812
TU65505 other downstream 67186 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 113083 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 377434 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 377609 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 392562 14807297 ~ 14809286 (+) False AMCG00008919

Expression Profile