RNA id: TU65523



Basic Information


Item Value
RNA id TU65523
length 1035
RNA type TUCP
GC content 0.62
exon number 3
gene id AMCG00008910
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14527818 ~ 14542248 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAGAGAGAGGGGTCCCATATGTGGAAAATAGCATTGCATTGCACAGAGCAGTCTGCCTGCACAAGGGAATATTTTCCAGCTGCAACTGTGATAGAGGAGATGCAGTCATGAATAGTTGCAGGGCTGTGTGTTGTGGAGAGGCAGCGCGTGCAGGCAGCAGGAATGGAGCACAGCCGGACAATGTCTGACCAGGAATTCACTGCTCCACCACAACGGTCCTAACAGAGCCCACTGCCCAGAATGCTGAGTCCTGTTGTCCCCTATAGTCTGTTGAAGATGCACTGGACCCCAGAGCACGCCCAGCCACTGACACAGTGGCCCGAGCAGCACCTGGACGTCTCCTCCACCACGTCGTCTCCGGCGCACAAGTCGGATCTGTACCCCAGCAGCCGGCAGCGCTACAACTACGCCTGGGCCAATGACGACATCTCCGCGCTGACCGCCTCCAACCTGCTGAAGCGCTATGCTGAGAAGTACTCCAGCGTGCTGGACTCGCCCTACGACCGCGCACCGGGGTCGGGCATCTACTCGGAGGGGGCGTTTGGGAGTCTGAACGGACAGAAGAGTGAAACGGAGCCCTGGTCCATGTCACATGGCCCCGAGGGGGGGTACTCACTAGGCCCCCCACCACCTCCTGGCCACGAGGTCCTGGGGGGCTCAAAGGGCACAGCCACGTCGGGAGGGCCCCCAGGCCCTGGCTCGGTGTCTATCGTGAACAGTAACCTCTCGGACCCTGGCTACAGCGGTGCGGGCTCTTGCAGTGGCCCCCCCACCCAGGAGTACCCCCCCACCTACAATGGCACCTACCTCTCCTCTGGGTACTGCACCCAGCCCGGCCCTCCTGGTCTGCTGCAGACCACCACCAGCCTTGTGCCCAGCTACACCCCCCCTGGATCTGTCTACAACTACCCTCCTAGCAGCTACCCCCCTCAGCCTGGCTATGCCACTGTGCACCCCCCTACTCCTTACCTGCCCTCGGGCCTGGCTGCTCCCACTCCCCTGCCTCCACGGCCGACTGTGATGGGTGGCAGCTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65363 lncRNA upstream 399127 14128487 ~ 14128691 (+) True G52234
TU65199 lncRNA upstream 840038 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 1050840 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 1212766 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 1215360 13311329 ~ 13312458 (+) True G51969
TU65529 lncRNA downstream 1681 14542639 ~ 14545754 (+) True G52361
TU65532 lncRNA downstream 11938 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 19761 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 21487 14562445 ~ 14562710 (+) True G52374
TU65545 lncRNA downstream 35478 14576436 ~ 14576682 (+) True G52377
AMCG00008909 mRNA upstream 35239 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008905 mRNA upstream 49704 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008906 mRNA upstream 72018 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008908 mRNA upstream 113083 14414349 ~ 14414735 (+) True AMCG00008908
AMCG00008902 mRNA upstream 149703 14366961 ~ 14378115 (+) True AMCG00008902
AMCG00008912 mRNA downstream 91559 14632517 ~ 14649949 (+) True AMCG00008912
AMCG00008917 mRNA downstream 197491 14738449 ~ 14751657 (+) False AMCG00008917
AMCG00008920 mRNA downstream 242085 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008919 mRNA downstream 267734 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008921 mRNA downstream 282345 14823303 ~ 14832837 (+) True AMCG00008921
TU65505 other upstream 44563 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1218388 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1270178 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1302872 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 1535326 12980804 ~ 12992492 (+) True AMCG00008837
TU65601 other downstream 251211 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 251386 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 266339 14807297 ~ 14809286 (+) False AMCG00008919
TU66074 other downstream 1315266 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1821144 16362102 ~ 16362511 (+) True G52942

Expression Profile