RNA id: AMCG00008912


Basic Information

Item Value
RNA id AMCG00008912
length 4042
RNA type mRNA
GC content 0.55
exon number 19
gene id AMCG00008912
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14632517 ~ 14649949 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGACTTCGGCCCCAAGCCGCACCGCCCTGCAGGCCAGCGCTGCAAGGAGGGGCGCAATGTGCGGATCGGGTCAGGGCCACCCTGCAGTGCCGGAGCTGAGCTGCAGATTGGCTCAGAGGAAAGTGACACTCTTGAAATACCCATCTGGTCATGTGACAGCCAACCAAGACCTGGAGTGTATCCTGGATGGGATCCCCAGCTTTGGAGCTACACAGCATGACTGGTCAGCCAGCTCCCTTCACTCAGCCCAGCCCGGCCTGAGGATGGCGCAGTGGAAGCAGGTGCAGCTCCTGCCCACGCAGACCCTGAGTGAGCTGGAGGAGTTTGACCTGGATGACCCCAGCGTGGAGCCTGTGGCCCTGGAGCTGCTGGAGCAGATCACAGCCTACATGCAGCACTTGGCGCATAACAACCTAGATGTGGTGGAGAAGATGAGACTGCAGCAGGTTGTCCGCAACATGGGCGTGTTCCGCACGCAGCCTCTGCAGCTGGTGAGGACCGTGAAGGACATCCTGAGGAAAGAGAGGACGCTGCTGAACCCCCCGATGTTCATGCCAGCCTCTCCAGCCCATCACTTCCCCCCTTGCTCCTCCCCGGCTAGGGCCTCCCCCTGCCCCTCCACCTCTTCGCCCCTGCCTGGGGGGACCCCGGGACCTGCCACCACCGCCGCCCCACCTCAGAGTAGCAAGGGGGCGCTGAGGGATGACAGTAAGAGGGAGCTGGACAGGCTGCTGATGAGAGTCCTGGACATCCAGAAGTGCCGACAGAAGATCCACCAGCTGCAGGAGGAGCTGAACTGGGACCGGCAGAACTGCGAGACCCTGCAGAGTGAGGCTGGCTGCACCAACCTGCAGAACCGCATCCAGCAGCTAGAGTTCAATGGCCAGGCCTTCACCAAGcAACGTCTGCAGCTCCTGCAGGATGCATTGTGCAGTCTGGAGCAGGTGCAGGCCCAGCTGCTGCGCTGGCTGCAGGCCTGGCGGAGGGAGCAGCACCTGGCCTCCATTGGCGCCACCTTTGACGACAACCTGGGTCCCCTGCAGAGCTGGTGTGAGCAGCTGCTTGGCGTGAATGTGCAGCTGAGTCAGGAGGTGATCATTGCGGGGAGGGACTGCAGCCTTGAGCTCGTGAGAGAGCTGCAGGACAAGCTCACACTGCTGCTCAAGACACTCATCCAGAACTCTCTCCTGGTGGATAAGCAGCCCCCCCAGGTGATAAAGACCCAGTCCAAGTTTTCCACCACCGTGCGCTACCTGCTGGGGGAGAAGGTGGCGTCAGGGAAGCCAGCAGTGGTGAAGGCCCAGATCATCACAGAGTCACAGGCCAGAAATCTGGGCCAGCCTGGCAGCCTGCTCACGGAGAATGTGGGCGAGCTCATCAACAATTCTGCCATCTTGGACCACAATGCCTCCACCAAGAGCACCTGTGCCACCTTCAGGAATATGtcTATAAAGAAGATAAAGCGCGCAGACAGGAAGGGTTCAGAGTCAGTGACCGAGGAAAAGTTTGCCCTCTTGTTCTCCTCAGAGATCAGCATCATGGGCTGTGACAGCCCCTACAGCGTCCAGGTGATCTCTCTGCCCATCGTGGTGATCGTCCACGGCAGCCAGGACAACAATGCCCTGGCTACCATCATCTGGGATTGTGCCTTCTCTGAGCCGgaccGTGTGCCGTTCGTGGTGCCGGAGCGTGTGCCCTGGAAGCAGATGTGTGTGACTCTTAACActGGCCGTAAGATCCAGAACATCCAGCCCTTCACGAAAAAGGACCTGGAGATCCGTTGCCTTGGCGACCGCATCCGGGATATTGAGTTCATCACCCACGTGTACCCAGAATTCCCAAAGGACGATGTCTTCAAGAAATACTACACAGGTGAGCTCTGCCAGTGCCAAGGTCCTGAGTGGCTACACTATTACATACTGCAGCTTTTGACTGCAGCCTGCAGGGAGGACCCACTCCTGAGGCAGCAGGCCAGCTTTTCTGCTTCCTCCTTCAGCGGCAGCAGCCCCCCCTGTACCCTGGAGCCCACCCCTGTGGCAGATGACAGAGTGAGGATGGATGACAGTGTCTCCATGTTCTACTCCAACTCCCCGTTCCAGCACACATACAACTCTGATCCGGGGATGATGCTGTCCTTTGAAACGCTGCCCCCGGTCATGGGGCTGTTCCCAGGACCGGACACACTTGGCAGCAGCCCAATGGCCAATCAGAACCAGTCTCCCTCAGACAACATGGAGTTAGAGAACTTCCTGGATGTCTTCCCCCTCGCACAGTGATATCACTGCCTGCTGGCCAATCACACACCGCAGAGAGCTTCTTTAATGGATTGTGACTCGCCAATCACAGAGCACAGCGGATTGAGAGGGAGGGGCTAAGGAGCCGGCTGTGCAGATCTGCCAGTTtctctttgctttgcttttcactCATATCTTTGTTGTTTATCCCATGAGGAGATCCATGTACCATCCTGCAGGTCACATTGATGCCATAAgtgtctgtattttgttgttatgtgttttttattgtgagTGCTCTAGTGACAGCCTGCGACACACTATGAGGTGCTGATGCGGGGGGCAGCTGGGGACTGTTCTGTGGTCTCTGTGCCCACCTGCTCTGCTATGCGTTGGGCTGTGGCTGCTCAGCTCCACCCCTCTATACTCGTCTGGCTCTTGAGGATGAAGGCAGCTGCACCCTGGAGTAGCAGGTGCTCCCTGCAGGACACGCTCAGCTATGAGAGAACGCTACAGGATCTCCACAACCCCTTAAACCCCACCATCCCACACCCACTGGGGAGCCCCCCACCTGGTTATATTGCAGCTGCTTTACAAACATTGGGCTGGACTGTAGGACATAGACTGAAGTCACAGAAGCAGACAGTCCTGCTCCTAACCTGGGACCTGTGTTTTTTCACTTGGTGATGTTTGTCCGCTGTCTCCGATTCTGCCTGGGGGGCTGTGGTGTTTAGCTCTGTATTTACACTCCTACACAGTCCTGATTCTACAGACACTCAGAGAGATGCCTCCCAGCTGTGGGAGGGGGTGTTACTGACTGCCTCTGgttcctgttttcagtttagCGCTGACTGAGCTTTCTGTAGTTTTGCTGCACACAGGGCTTTAGGCCTGGCAGTTGGATTGAGTTGGGTCAAGGACACCCAGAACCTCACATCACTAGAGCTGGACTGGACCCTGCGCCCCCCTGAGTGGCTCTGACCTGGAGGAGTGTGCTGGCCAGGGCACATAGGCCAGGCTGGGTTTTGACCCCTTAGGTCTTGGAAGCAATAGGAGGCAGTAGACTGATGCCTGGTGGTCAGGCCAGGGGGGCATCCCTCCTACTTACCCCCAACAAAGCTTGCAGGAAGGCCCAGCCAGACCCAGAGAAGCCGCCCCGCTCACAGTTCCTGCTGGAACTCTGCATCTCAGACATTCACTGCTGGGGAATAACTCTGGCTGTCTGCCCCGCTTCCCCTCTCTGTGTATATCTTGCTGCTTCTTTCTATGTTTTTCTATCTCACAgcctgtacattttgttttgtatttccttgCTGTCACAGCATATGTCCCTGTTGTCtgtggtttagttttgtttttgttctgttgcagtgtctgtctctctctctttttctgttggTATTTAATGTGCTTTGCAGGAAAAAACAAGTTTAGTTTGTAATCTGTATTTACATACATTCCATTAagacgtgtatatatatatatatacacattatattccTATTGTGTTACTTAAGGTCTGTgccagaaaacaattaaaatggtgcAGACCCATCCCACGGCAGAGTGACAATGTGCACAGTACACAACACTGACACCAGTCCTCCAGGAGAGTTtattgcctgtttctttgtaatTCCCAAGAAGAGTACAAAGGTAAATACTACAAATTAAAGAATAGGCAATAAGATGTGTcagtagaaaaacaagaaaagatcTGTACTCCTTGAAGGTGGGGGCACAGAAAGTGGAACACAATAAAAAGCACAGGtcatgaatacaataaaataaataaatgtctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65552 lncRNA upstream 12234 14619961 ~ 14620283 (+) True G52384
TU65551 lncRNA upstream 25824 14606482 ~ 14606693 (+) True G52383
TU65550 lncRNA upstream 34065 14597967 ~ 14598452 (+) True G52382
TU65548 lncRNA upstream 49225 14583093 ~ 14583292 (+) True G52380
TU65547 lncRNA upstream 54195 14578091 ~ 14578322 (+) True G52379
TU65605 lncRNA downstream 100472 14750421 ~ 14754644 (+) True AMCG00008917
TU65609 lncRNA downstream 116262 14766211 ~ 14831477 (+) True G52430
TU65621 lncRNA downstream 163546 14813495 ~ 14814414 (+) True G52439
TU65696 lncRNA downstream 332174 14982123 ~ 14982509 (+) True G52497
TU65697 lncRNA downstream 332624 14982573 ~ 14984525 (+) False AMCG00008931
AMCG00008910 mRNA upstream 90269 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008909 mRNA upstream 139938 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008905 mRNA upstream 154403 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008906 mRNA upstream 176717 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008908 mRNA upstream 217782 14414349 ~ 14414735 (+) True AMCG00008908
AMCG00008917 mRNA downstream 88500 14738449 ~ 14751657 (+) False AMCG00008917
AMCG00008920 mRNA downstream 133094 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008919 mRNA downstream 158743 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008921 mRNA downstream 173354 14823303 ~ 14832837 (+) True AMCG00008921
AMCG00008928 mRNA downstream 299931 14949880 ~ 14979753 (+) True AMCG00008928
TU65523 other upstream 91559 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 149262 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1323087 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1374877 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1407571 13222320 ~ 13224946 (+) True G51928
TU65601 other downstream 142220 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 142395 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 157348 14807297 ~ 14809286 (+) False AMCG00008919
TU66074 other downstream 1206275 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1712153 16362102 ~ 16362511 (+) True G52942

Expression Profile