RNA id: AMCG00008913


Basic Information

Item Value
RNA id AMCG00008913
length 3958
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00008913
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14671441 ~ 14681624 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAACTggatatttttacaaaatgcgGCGCTGTAGCAGGAAGGCGATGCTTCAGAAAACATAGGACAGTCGTGGATCTGTTAGACAAGAACAAAACCCAGCcaaactaaaaacatacattgGACCCGGACATATCGGATCCTGAAGAAGAACAAGATTGTAGTTTGTGCAACCTGTCCTCTCTCCCGTGCCCGGCATTGTCAGTGCCCTGAGTGACGACCTCCTCACATGCGTGGCACCATGGCTTCCTCTCATGCCCTGCGAGAGCAGAACTGGGCTGCTGGCACACGGGGGGCAGCTCCTGGCTTCAGTAGCCGGGCCCGTGACCCTGCCCCAGGTACAGGAGGAACCCTCAAACCACTGAGCTCAAAGACCAGTGCTACTCCCCGGGGGCTGTGCATCGAGAACCAGGACCCCTCACTGCCTCAAGACTGTCCTGTGAAGAGTGCCCCCCTGGGGGGTAAAGTTCAGAAGAAGAAGCCATGCACCAAGCCAGTACCCTTCAAGCTCTCTGGACCTCGGGCCACCAGGCCGGCAGCATTGACCAAACAGACCATGTGTAAGACACCCCAACCTGGACCACTGCCACCAAGCCAGACTACACAGCCAGAAATCAGTAACACACTTGAGCTTACTGTCACCAAAAACACCGCCCAGACTGTATTACAGATGGATGTTCATACAGACCAGTCTGTAAATGCCAGGCCTTTTAACATTGCCCAGTCTGGACACCCAGTCATCAGCAGGTCAATCCAGTCAGTGTACCCTCTATGCAGTAATACAGCCAAGTCTGTACATACTACACTGCCCAGTACTGCCCAGTCTGTACATCCTGAACTCAATGCAAATGTCAACCAGAGGCCTGTTCAAGCAATTCTCCTTGCAAACCCATCAATCAACAGTGTGATCCAGTGTATGCAGTCAACAGTCCTGCACACTACCCAGCCTGTACCATACCACCTCACTGAAGCAGCCCAGTTCAGTGCTTCTTCAGTCACCACTGCAGAGGAATCTACACATCAGGCCTCCTCGAAAATGAATGATTTTGAATTACCAGCACCAAGCTGCACAGCTCAGTCAAGCAAAAACACCCAGCTGATGCCTCCTACCACTCTTGAAATGCCCAGTTGTATGGTCAGGCCTAGAATCCCAGGAGTGAGCAGTACAGAACAGTCCTTACATCAGGCATCCAGCTACACTTCTGGGATCATGCAGTCTGCACTGAGTCCCCCTGCCCAGCCTGTATACACATCCCTGAGCTCAGCTGCTCCTTCTGCTCTGAACACAAGTTACCCTGTGCACCCAGCTCCCAATTCTCCCAATGCCTGTGCAAGCCAGTCTTTTCTGCACAGGCCTGCACTCTGTGACACAGGCCTCTCTGCATTTGGAGCACTCCATACAAAAAGCCTGTCACTCAGTAATATGGACcagtctttaaaaaacacacaaccctcTCTGCACCTAAACTCGGGCAGCATGGCTCTAGCGGGGCACCCGGTACTTAGTAATGTGACCCAGTCCTCTGAGTCGGCCAGCAGCACCACGGCTAACTTTGGTTTGTATACTGATCCAAATCTAGAACACAATGGTTGCTCTGCTTCCTCCTGCTGTGGCTGTACCACCCTCCACAGTGAAGAGAAGATGAGGCAAGATCAGTCAGTGCACACCCTTACCTGCAGCTCACGGTTGCCTGCACAACTTGCCTCTCTCACCATCAGTCAGCAGGGTTGTGGACGGATGGCACAGATTTGTCGGCAGGAAACAAGCGACACAAACCCAGGAGACTCGGAAGGGATGGGCTGGTCAACTCAGCCACAGCACCAGAGTGTTGACCAATCTGTAAAGTCAAGGCAAGAAAATAGGGATCAGTCTGCAAAGCCACTCGATTCAGGTATTAAAGAGAATCCCAGCACCTTTTCAAAACCAAAGCCCATCTCCCAGGACAACTCTAGTACAGCATTGGCAGGTGGTGTGGTGCAGTTCTCCCCAGATCCTGTGGCACTGCGCACTATTCTGCAGAATGAGGGGCTGAGAGCCGGGGTGGCTGTGGGGTCCCTGCTGGAGAGGAGCTCTGTGCGTTCTTCTGTCAGGGGCAGCTCTGTGTACCTGCCCCAGAGAGTTTTGGTCAAGAGAGCGCGGCCTGCAGGAATAGTCAGTGCAGCTGCAGAGCAGGCCATGACCCCAGCACAGCGGTGGACCCCCCAGAGAGTGCCAAACACGCGTTCACTGTGCAGGAAGGCACAGTCTGTCCAGCGCACTCCTGAGGGCGTGGTGCAGCGTCTGTTCGAGGAAAAGGAGGAAGTCCAAGAGCATGGACAGGAGgaccagggagagagagagcctgaGATGCAGTGCACAAACACTGCCCCAGCCATACcgcagagtgagagagagggagccagAAAGAAGGGAGTGTGTGGGGGCCTCCCGGACCCCGAGAATGCCAAGGTCACTGCGCCCTTCTTCCAGGCCCCGCACCGCGAATCTGTCATTGTATTCTCCCACAGCCAGAGGGTGTACAGGGGCATGGGGCATCAGGGCAGTGCCCAGGCTACACAGGATGGCCCTGGTGGGGGGTTGCATGTCCCAATTGACCTCAACTCCCACCCCCACCATGCTGCTGAGGCTCCCCAGACAAATCAGCCCCCTAACACCCACCACACTGCCCCTCTGGAGCCCTCCGTATGTCCCAGAGACCTGCCCCTCGCGGGGAACTCCGCTGCAGATCCAGGTAGTGAGGTGCGGTGGTGCATTCCAGCGCCTCCCCCTGGCTCGACGGTGAGGCGGCACCCTGCACTCGGCCCCTCTATTCAGGACATCCTACTGGACGAAGAGTGTGCCGCCTATACCTGCCGTGCCCCCAATCAGCCCCGCCCCCCACGCCACACCTGCTGTGACCCATTGGCTCGAACCCTTGACCTGCAAGACTCCACTCACACTGAGACCTCGGCTTCCAGACCAGGTTCTGTGACCCTGCCTTGGCCGAGATCGGCCACTAGAGGGCCCTCATCTGTTGTGTCCAGTCTTCCTTCTGACTCAtGCTTCATACCCATTTTCCTGCACTCCTACTCCTCATCCCTTGTTTTCCAATCATCCTGCTGAGAGCAGACTATGCTGGGGGATTTGTGTCCTGGTAGGGGCTCTGTCTCCCTGTAACACCCGTCTTCCCTCCAATACTACCTGTCAATCAAACGAAGGAgcaccaacaacaaaaagtagAGCACAGAGACTGgcaacaagcaagcaaacaaaactgtCTTCACTGAGATGACTGAGGAGACCTCTGCGCCTTCAGCCTGCAGGTTTTGTAAAACAACCTGGAACACACATTGTATACAAACTGAAACATTAGGTAAATTTCATGAACTGTCAAGGCACAGAAACCAGAGAGGCTGCTGACTGGCCTGAACGGTGGAAAATGAGTAgaactgtaattgtaattgtaaatttaaattcCTGGAGCTACAGTTACAAGAGTTAGGCCGGTTTCTGCACTGTGAGGAGTCCTCTTCAAGCAAAGACCATTCACCACAGCGGAAACTGAGGAAAATGGCGAGTCGAGTCAGTGCAGCTGACTGGACTGCTTTACTTTGCCACCTCAAATCTGAAACGTGATGTCTAAAATACAGAACACTAAGCAGATGCACTGACTGGCTGAATGTTTATTTGGAACATAACCTGCATTTCCTGACACAGCTGGAGAAAACAATTGCTTACCAGCCACAAACTCCTTATTCTGCAAGATCACTTTTTTTGGCAacacatttattgtttattttgtgttttgaactTTTTCTATTACAGATTACCAAGCCAGTGCAATTATCTAagtttgtttaatcatttttatgtaCAGCATTGACAATAtgaataagtaagtaaataaattaataaataataatgtacaatgtCTATAGAAGTGTTTGTGTGCACCCAGAGGAAGATGGCCAAccgtgtg

Function

GO:

id name namespace
GO:0005657 replication fork cellular_component
GO:0005694 chromosome cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65555 lncRNA downstream 73023 14597967 ~ 14598418 (-) True G52387
TU65531 lncRNA downstream 125691 14542556 ~ 14545750 (-) True G52363
TU65530 lncRNA downstream 128942 14542066 ~ 14542499 (-) True G52362
TU65520 lncRNA downstream 157363 14513877 ~ 14514078 (-) True G52355
TU65458 lncRNA downstream 293111 14373591 ~ 14378330 (-) True G52308
TU65589 lncRNA upstream 12206 14693830 ~ 14712386 (-) True AMCG00008918
TU65593 lncRNA upstream 50499 14732123 ~ 14733797 (-) True G52421
TU65678 lncRNA upstream 159116 14840740 ~ 14850877 (-) False AMCG00008923
TU65723 lncRNA upstream 312946 14994570 ~ 15006197 (-) True G52518
TU65718 lncRNA upstream 313292 14994916 ~ 15023128 (-) True G52513
AMCG00008914 mRNA downstream 4671 14653450 ~ 14666770 (-) True AMCG00008914
AMCG00008916 mRNA downstream 59214 14605976 ~ 14612227 (-) True AMCG00008916
AMCG00008915 mRNA downstream 83491 14570452 ~ 14587950 (-) True AMCG00008915
AMCG00008911 mRNA downstream 176177 14492170 ~ 14495264 (-) True AMCG00008911
AMCG00008907 mRNA downstream 278423 14390189 ~ 14393018 (-) True AMCG00008907
AMCG00008918 mRNA upstream 15102 14696726 ~ 14715322 (-) False AMCG00008918
AMCG00008924 mRNA upstream 75015 14756639 ~ 14765251 (-) True AMCG00008924
AMCG00008925 mRNA upstream 85332 14766956 ~ 14770430 (-) True AMCG00008925
AMCG00008926 mRNA upstream 114726 14796350 ~ 14797477 (-) True AMCG00008926
AMCG00008927 mRNA upstream 119145 14800769 ~ 14805666 (-) True AMCG00008927
TU65310 other downstream 687548 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 722350 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 984704 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1346214 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1362016 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 803758 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1155365 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1160040 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1160040 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1276043 15957667 ~ 15963617 (-) True G52834

Expression Profile