RNA id: AMCG00008917


Basic Information

Item Value
RNA id AMCG00008917
length 2500
RNA type mRNA
GC content 0.59
exon number 24
gene id AMCG00008917
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14738449 ~ 14754644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAAAGATGGCGGTACGGAAGAAAGACGGCGGCCcgaatgttaaatattttgagGCGTCCGACACGGTTTCGCAGTTCGACAATGTCCGGGTCTGGTTGGGCAAGAATTATAAAAAGTATATCCAGGCAGAGCCGCCCACTAACAAGTCCCTGTCCAGCCTGGTGGTTCAGCTGCTGCAGTTCCAGGAGGAGGTGTTCGGGAAGCACGTCAGCAACCCGCCGCTCACCAAGCTGCCGATGAAATGTTTCCTGGACTTCAAGTCAGGTGGTGCTCTATGTCACATCCTGGCAGCAGCATACAAGTTCAAGAGCGACCAGGGCTGgCGGAGGTTTGACTTCCAGAACCCGTCCCGAATGGACAGGAATGTGGAGATGTTCATGACCATTGAGAAATCGTTGGTCCAGAATAACTGTCTCAGCCGGCCAGTCATATTCCTCAGCTCGGACATCGAACCCAAGCTGCTAGGCAAGCTGAAGGACATCATCAAACGCCATCAGGGCTCAGTGACGGAGGAGCGGGCGGCCAGCTCCCACATTGTGGTGCCCATCCCGGCCAGCCTAGAAGAGGAGGAGTGGGTGCGGCCGGTGATGAAGAGAGACAAACAGGTGCTTCTGCACTGGGGCTACTGTCCTGACAGTTATGATACCTGGATTCCAGCCAGTGAGGTGGAGGCAGCTGTGGAGGACCCCCCAACTCCAGAGAAACCCCGCAAAgtgcATGCAAAGTGGATCCTGGACCTGGACTGCTTTAACGAGTGGATGACAGAGGAGGACTATGAAGCGGGGGAGGGGCTGCGCAGGAAGCGCATTTCAGCCAAAACGCTGACGGACGAGGTCAGCCCCCCTGACGGTGAGCGGCGGGACAGGAAGCCTGGGAATGCCAAGAAGAGGAAAcgctccccctctccctcacccaCCACCACACCTGAGACCAAGAAGAAGAATGCCAAgaaggggccgGCGACTCCCTATGCCAAGTCAAAGCGCGGCCACcgtgaggaggagcaggaggaccTGACCAAGGAGCTGGACGAGCCATCACCAGTGCCTGCGGTGGAGGAGGTCACGCTGCCCAAGACCGtaAACACTAAGAAAGATTCAGAGTCTGCGCCGGAGGAGGAGCAGGCCAGCCCCAGTGTGAGGGGGGAGCCGCTGAGGGGGACTGATCTCCACGAGGACAATGTCACCGAACAGACCCACCATATCATTATCCCCAGCTATGCCGCCTGGTTTGACTACAACAGtgttcATGCCATCGAGCGCAGAGCCCTTCCAGAATTCTTCAATGGCAAGAACAAGTCCAAGACCCCTGAGATTTACCTGGCCTACAGGAACTTCATGATTGACACATACCGCCTGAACCCCCAGGAGTACCTGACCTCCACCGCCTGCCGCCGCAACCTGGCTGGGGATGTGTGTGCCATCATGAGGGTCCATGCATTCCTAGAACAGTGGGGCCTGATTAATTACCAGGTGGATGCAGAGAGCCGCCCCACCCCGATGGGCCCCCCCCCCACTTCGCACTTCCACGTCCTGGCTGACACTCCCTCTGGCCTGGTGCCCCTGCAGCCCAAAACATcccagACCCCCGCCTCCCAGCAGATGCTCAGTTTCCCAGAGAAGGTGAAGGAGAAGCCGGCTGACCTGCAGAACTTTGGCCTGAGGACAGACATGTACAGCAAGAAAAGTGGGCCAGCCAAGaGTAAGAGTGCAGCCAGCGCCACACGGGAGTGGACAGAGCAGGAgaccctgctgctgctggagGCTCTGGAGATGTACAAAGACGACTGGAACAAGGTGTCGGAGCACGTGGGCAGCCGCACGCAGGACGAGTGCATACTTCACTTCCTGCGGCTGCCGATCGAGGACCCGTACCTAGAGGACAGCCAGGCGTCTCTGGGGCCTCTGGCCTTCCAGCCCGTCCCCTTCAGCCAGGCGGGGAACCCGGTGATGAGCACCGTGGCATTCCTGGCCTCCGTGGTGGACCCCCGTGTGGCCGCCGCCGCAGCTCGCAGTGCACTGGAGGAGTTCTCGCGGATGAAGGAGGAGGTGCCGTCAGCGCTGGTGGAGGCCCATGTGCGGCGGGTGGAGGAGGCAGCCCGGGCGAGCGGCCGGCAGGACCCCCTCGAGgacaagagagagagcaagGAGAGTAAGGAGGGCTcgctggaggaggaggacaaaCAAGGAGAGAATGGAAAGAAGGAAGAAGAtcgagggagagagggagaaggggagagagaaggagagaaggcAGACCCTGAGATGGGTgatggagagaaggagaaggagggaaAGGAAGGCTTAGAAGAAGGGCGAAGGGAGAccgagagtgagggagagaggagggcaAAGATGAAGAAGCTGGAGATCAAGCTGAGGCACTTCGAGGAGCTGGAGACCATCATGGACCGCGAGAGAGAGGCGgtcagaggtcagccCATGGGTCTGGGCAGCAGCAATCACAGTGATGGTGACAGGCTGACCACAGCCCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65552 lncRNA upstream 118166 14619961 ~ 14620283 (+) True G52384
TU65551 lncRNA upstream 131756 14606482 ~ 14606693 (+) True G52383
TU65550 lncRNA upstream 139997 14597967 ~ 14598452 (+) True G52382
TU65548 lncRNA upstream 155157 14583093 ~ 14583292 (+) True G52380
TU65547 lncRNA upstream 160127 14578091 ~ 14578322 (+) True G52379
TU65609 lncRNA downstream 14554 14766211 ~ 14831477 (+) True G52430
TU65621 lncRNA downstream 61838 14813495 ~ 14814414 (+) True G52439
TU65696 lncRNA downstream 230466 14982123 ~ 14982509 (+) True G52497
TU65697 lncRNA downstream 230916 14982573 ~ 14984525 (+) False AMCG00008931
TU65692 lncRNA downstream 275061 15026718 ~ 15027582 (+) True G52493
AMCG00008912 mRNA upstream 88500 14632517 ~ 14649949 (+) True AMCG00008912
AMCG00008910 mRNA upstream 196201 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008909 mRNA upstream 245870 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008905 mRNA upstream 260335 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008906 mRNA upstream 282649 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008920 mRNA downstream 31386 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008919 mRNA downstream 57035 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008921 mRNA downstream 71646 14823303 ~ 14832837 (+) True AMCG00008921
AMCG00008928 mRNA downstream 198223 14949880 ~ 14979753 (+) True AMCG00008928
AMCG00008931 mRNA downstream 230967 14982624 ~ 15020846 (+) True AMCG00008931
TU65523 other upstream 197491 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 255194 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1429019 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1480809 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1513503 13222320 ~ 13224946 (+) True G51928
TU65601 other downstream 40512 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 40687 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 55640 14807297 ~ 14809286 (+) False AMCG00008919
TU66074 other downstream 1104567 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1610445 16362102 ~ 16362511 (+) True G52942

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062927 True 5184 mRNA 0.45 26 NC_007117.7 39836474 ~ 39866670 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_09305181_09322207.mRNA True 3059 mRNA 0.49 24 CI01000340 9305181 ~ 9322390 (+)