RNA id: TU65605


Basic Information

Item Value
RNA id TU65605
length 3745
lncRNA type sense_over
GC content 0.44
exon number 2
gene id AMCG00008917
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14738449 ~ 14754644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGCCCCCCACCAGCGCCACCCTACACCACGAAGAGCCCTGCCCCCCCAGTGAGACGAAGGgacgagagcgagagagagacagagagactgtaAACTGAGACTCATCCTGAGGATGGATGGGCAGCAGACAGAAGAGCAGCAGAAACTCCAGTAAAAGTGGAAGGACCCGTTTTCTTTTTATCCGTCCGCAGTGTGTGTGACCCAGTTGGGTCCTTGTTTCACCAGCGCAATGTCACTTGAGGTGGCAGGTTAGGGGATGTTGGCCCTGGCTGTCTCACACGGGTGGACTGGCTTATGATCAACTGGCCAGTGCAGTCTGATCATGGGGTCATTGTCACTGCCTAAAGGGACAGTCAGCCAACGCTGGCCAAAACAACAACTCTCCTGGACAGTGTTTGATCTGAACTAAAGCATGCAGGCCCTTCACAGCCCTTCAGTATATACTTCAGTATAATGGAACACAAGGAGCTTGTTGGACCTGCAGAAACACTGCCAGGAgtttgtataaatgtgtgattGATGGCTGATACAGAagttattgttcttattatgaTGATCTTTGCTGTTAATCTCCCTTTAGCTGAGGGAGCTAGttctctgtgtttttctctgaaGCTCATTTTCATTGTTACCACTAACAGCCCAGTGGTAGGGTTCTGGTTATTTTGCTGCTCTGTCTggcaggtcagaggtcagccCATGGGTCTGGGCAGCAGCAATCACAGTGATGGTGACAGGCTGACCACAGCCCTGTAGGGAGGTCTGGGTTTCCACCACTGCGCTGTAAGCTTCCTCCCTAAGGCCTGCTgccggcctgcctgcctgtccgtgtgtctgtctcGGTTCCAGTGCCGAAGGAGGAGTGCTGGCTGCTTGTGCGCCACTCCCTCCCAAACTGATTCAGTCCTTAGGAGTCAGAGCCAGGCTGTCCGAGCCGAACCAGAGCCAGCACTGACCCAACCCCATCACTGGGCAGCTCCTAGCCCAGTGTCCAGACAGGGTGTGTAAATAATGAAGGTAGGCTGTTCCAGTCACAGCCAGTCTCTCCTCTAAAATATAGGTCAATGAAACGAGAAGAAgtagaaaatataaataccaacacattttgtgttcattgtacattacttattttatatttttactgttttatttttactgtaattatgctattgttgctgtttttatttttgaatatgtatctatatatttatctgtCCATCTCTATCTCTGTCTTCTCTGTCTATTTCTATCTATTAATATTCAGATACGGACTTCGTTATTTTCTGAGTGTCTCTGCAGCTGTAGTGTTCTGTTTTCTTTGGGTCTGacctgtgacctctgacctgttGTGTGGCTGTCTGCAGTGGGGGACCCTGTGTGTGGGCACTCCCTCAGCTCTCActtacttaattgatctaattgttTCTTCAGTAAGAACCTGTtgtggtcctggagagctccaGTCCTTCTGGTTTTAATGATGTCTTcagcaaagaaaatatttgtcctcactaataaaatgaatatttttttcagttaagTAATAAGGAGCTTGAGAGATATTAAAAGGCAGAAGACCCTTGGGCCCCGGCACTGAGGGGGCAGCACAATGGGGCCCcacactgcagctctgtgtttctgtgcaggTTAGTGGGTCCATTGTGTCATAGATACCTGGTATGATACTGAGTGATTCTGTTTGCAGACTGACCCCTCTCTGTTGTAGATGTTTTCTTCATGTTAGCTCTGCTTCTCTCTGTGCtgatgtcagaaaaaaaaacataaaaaaatgaagaaaagaaaaacataaattgcCAAGCAGAAACACTCTTATTTTCAAAGGAAATGGAAACAAGAAAAAGTTGAAGAATAAACATATTTGCTGATGAAGGTTGTTAAACGTCAGccttctgtctctgtgtgattCTGTGCTCCTCTCCCTGCATGGTGACTGTGGGCTTAACCTAATCAAAACTCTGACTTACCAATTAATTGCAATCAGATACTACTTTGAAATCTATCATTCACTGGATGGTCAATGTGAGTCTGTATTGTCAGGAAGCGAGTTATGGATACAGTGATCCTCGTGTGCTGAAATGTGTGTgcaacaattatattttgaagcattttgtgCATTTATGGATTGCCTGACCGCGTGAGCTCTGCTAACTGTTAGACACACTCCCCTCTGGCTGAGTTGTAATGATGCTCACCCTACCCACTGCAGCATGCCCTTGCATGCGCTGCAGCTCCTCTGTTAGCTGCCTGGAACCTTATAATAGTACCCTGTCTCAGGACACCCATCGCACACACTATATTAAAGAAAGGCTGGGCGCTGTTTCTTAAGTTAGGGAAGTTGTGGCAGGAGCacctgtgtttaaaaacaaattcctgtttttgtattgaaatagaATCAGTGCAGTTTGTCTTATCAGGGTTAGAGAGCAGAGGCACACCTTTGTATAATGCTGGAGGGACAACTGAAGCTGGGATTCTAGCACCTCTGACTACAGTAAGTAAACACATGTCTGGAGGCCTTAAATGGTTAAAGGTTCTTGTAGGGAGTCTTCTGATGTGGAGCCAGTGACCTTTCCTCACAGCATAGGCAGCATTGTTTCACTTTCCAGACCCCACTGTTTTTCCTGATCACCTTTCCTAATATGGTATTGCCCAGTGCTATGTGTTTACAGCACTGGGGATGGGTTGGAATGTACCAACGTAAATTGAATAAAAGGGGGGGATAGCATTTCATGGGTCCTCAATGACAAGGTCAGTGACGATTGTTGAGGTCTCCTAAACTTTGCTTTTGCAATCTGGCCATGTGGATTGCTGATACCTGTTtcaaagtgtttgtgttttagtgtgAAAGACATGTGCTTTGCtcattgtgtgtatttatttacactgttaATACTTAGTATTAAATATTGgtcaataaatcaaaacatttcaatttttatattCATCTTTCTCAGTTGAAGTAAACCAAGAGCAGAAGATTGTCAGACCAAAGATATTAGATCTGGATTTACAAGTATTTTAAGTGTTAGACGTGTTAAATCTAAACgtataaaatgtgtatacatgGCTTGAGTACCAAACAAATCAATGTGAATGACCCAGGTATTCCCACAGTAACCTTAAAATGTGTGGAGCATAGGCACACTGGCCATTGGGCAATTCTTGCATTGGGCCTATCCATTTATTAGTTTGGTGGGCTGGTTGATTCCCACGTGGGCCGGTCACCACATTGCCAAtaaccccccccatccccccacccccggacCGCACTTTATCGCCCCcctgggtaaaagtccaggactgttttttggtcccagtccgcccctggtGTGAAGTATAGATTCGACACAAGACCCACTTATTTGATGAACAATTAAGAAGATCTTCACAGAAGCGTAAGCTTTATCTGTGTAAGAAGGGATGATCTCCTTTTAAGGTTACCCCACATCATATGAAATCACTAATGCAGTGGAGAGACTGGTTGAAGAGGCCTAGGCAAGTCAGGCATTTGTGTAATGTATGGTGTAATGTATGGTTTGTAATGGAATGATCTCTGGAAATGTTTAACAGAATTGCcttatttgaaaactgaataaaatgcaaaacagaagagaaaggaTTGTGACTAAATGTTTGAAGTGTGGAAAACACTAAAAAGTAGAACCTTGGAATTTGTATGCAAACAATAGTTTAATCATTTCAGTAGTGTTAATAGGCAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65552 lncRNA upstream 130138 14619961 ~ 14620283 (+) True G52384
TU65551 lncRNA upstream 143728 14606482 ~ 14606693 (+) True G52383
TU65550 lncRNA upstream 151969 14597967 ~ 14598452 (+) True G52382
TU65548 lncRNA upstream 167129 14583093 ~ 14583292 (+) True G52380
TU65547 lncRNA upstream 172099 14578091 ~ 14578322 (+) True G52379
TU65609 lncRNA downstream 11567 14766211 ~ 14831477 (+) True G52430
TU65621 lncRNA downstream 58851 14813495 ~ 14814414 (+) True G52439
TU65696 lncRNA downstream 227479 14982123 ~ 14982509 (+) True G52497
TU65697 lncRNA downstream 227929 14982573 ~ 14984525 (+) False AMCG00008931
TU65692 lncRNA downstream 272074 15026718 ~ 15027582 (+) True G52493
AMCG00008912 mRNA upstream 100472 14632517 ~ 14649949 (+) True AMCG00008912
AMCG00008910 mRNA upstream 208173 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008909 mRNA upstream 257842 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008905 mRNA upstream 272307 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008906 mRNA upstream 294621 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008920 mRNA downstream 28399 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008919 mRNA downstream 54048 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008921 mRNA downstream 68659 14823303 ~ 14832837 (+) True AMCG00008921
AMCG00008928 mRNA downstream 195236 14949880 ~ 14979753 (+) True AMCG00008928
AMCG00008931 mRNA downstream 227980 14982624 ~ 15020846 (+) True AMCG00008931
TU65523 other upstream 209463 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 267166 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1440991 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1492781 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1525475 13222320 ~ 13224946 (+) True G51928
TU65601 other downstream 37525 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 37700 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 52653 14807297 ~ 14809286 (+) False AMCG00008919
TU66074 other downstream 1101580 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1607458 16362102 ~ 16362511 (+) True G52942

Expression Profile