RNA id: TU65619



Basic Information


Item Value
RNA id TU65619
length 1085
RNA type TUCP
GC content 0.59
exon number 2
gene id AMCG00008919
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14807297 ~ 14811757 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTCCAGCCTCTCAGGTGGGAGTGAGAACCGTTTCCCCCTAGTCACAGGTCGTTGATGGAGCCAACATGGTGGGCAGTGGGGTGTCAGTTTCACAGGCGCTGGGGAAAGACGAGGCGGAGTTCGTGTTTCGTGGCGtgacacaaaacacagcagagagggagagaaagagagacagagcgtCGGCCACTCGAGATAGGATCACGGCAACCCGCGGAGACACTCACCACGACAACAGCCCGGCCGTGGCTGCAGTCATCTCTGCCCATCTTGTTGCTGTAGTGCTCGTTCATGAACAGCTGTAATTAGCGACGAGACGGGTAACAGTATTGTGGACCGGCAGCATAGGGTGGCAATTATTAATCTAACAGTGATTATTGACCCCGTAATTGTAgacaaaaatgcagtaaaacgCGGAAGGACCCACGAAAGGTGACTATTTACAGCTACACAACCCaTTCCACCCACCCCATCACTCTCTCCCTGCCTACCATGTCcgccaaccccaaccccaaccccaccccGTCCCATTCCTCTTCCCAACCCCTTtctcattcctcctcctcctcctcctgccactcctcctcctcatctgcACAGCCGCAGCCACCACCACCGCCGTCACCCACAGAGACGGTGCACTACATCCACTTGCATAATGCCAGCCAGTCGGTGCTGGAGCGGCTGCGTAGCCAGCGCAGCCGGGGCCAGTTCTGTGATGTCACCGTGCGTATCCGGGATGCCTCCTTGCGTGCGCATGGCTGTGTGTTGGCTGCTGGCTCGCCCTTCTTCCAGGACAAGCTGCTTCTGGGCCATTCAGAGATTGCTGTGCCACCACTGGTGCCGGCCCGCGCTGTGCGGCAGCTGGTGGATTTCCTGTACAGTGGCTCGCTGGCCGTGCTGCCCTCCCAGGCCCTGTGCATCCTCACAGCCGCCAGCATCCTGCAGATCCACAGCGTGATTGATGAATGCACACAGATTCTGCTCTCACAGCGGCCCGGGGTGGCAGGGGGTGCAGGGCTGGGAGGTGTGGCAAagcaggagggaggagggggggtgatGGACGAGTGCACACAGATCCTTCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65605 lncRNA upstream 52653 14750421 ~ 14754644 (+) True AMCG00008917
TU65552 lncRNA upstream 187014 14619961 ~ 14620283 (+) True G52384
TU65551 lncRNA upstream 200604 14606482 ~ 14606693 (+) True G52383
TU65550 lncRNA upstream 208845 14597967 ~ 14598452 (+) True G52382
TU65548 lncRNA upstream 224005 14583093 ~ 14583292 (+) True G52380
TU65621 lncRNA downstream 4209 14813495 ~ 14814414 (+) True G52439
TU65696 lncRNA downstream 172837 14982123 ~ 14982509 (+) True G52497
TU65697 lncRNA downstream 173287 14982573 ~ 14984525 (+) False AMCG00008931
TU65692 lncRNA downstream 217432 15026718 ~ 15027582 (+) True G52493
TU65797 lncRNA downstream 315301 15124587 ~ 15125501 (+) True G52580
AMCG00008920 mRNA upstream 12113 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008917 mRNA upstream 55640 14738449 ~ 14751657 (+) False AMCG00008917
AMCG00008912 mRNA upstream 157348 14632517 ~ 14649949 (+) True AMCG00008912
AMCG00008910 mRNA upstream 265049 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008909 mRNA upstream 314718 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008921 mRNA downstream 14017 14823303 ~ 14832837 (+) True AMCG00008921
AMCG00008928 mRNA downstream 140594 14949880 ~ 14979753 (+) True AMCG00008928
AMCG00008931 mRNA downstream 173338 14982624 ~ 15020846 (+) True AMCG00008931
AMCG00008930 mRNA downstream 223448 15032734 ~ 15045423 (+) True AMCG00008930
AMCG00008932 mRNA downstream 241409 15050695 ~ 15065008 (+) True AMCG00008932
TU65601 other upstream 12325 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 12325 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 266339 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 324042 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1497867 13306732 ~ 13309430 (+) False AMCG00008856
TU66074 other downstream 1046938 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1552816 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 1770577 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1863217 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 2521606 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile