RNA id: TU65697


Basic Information

Item Value
RNA id TU65697
length 1953
lncRNA type sense_over
GC content 0.38
exon number 1
gene id AMCG00008931
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14982573 ~ 15020846 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggtggaggTAAttagagacagagggagagatgaaaCAGGGTAATAAGAGATGGAGAGAACAAGAGAGGTGGGGTGGGAGGAGGTAAGTAGGAGAGAaggatggagagacagagaaagaagtgAGAACAGTAACCAATGTACTATAGTCAGTcagactccctctctctctctctccacccatTTTCTCATTATCTCCTCCTCTCTACccttccctccccacccccctgctccctctctcccactgaGTCCATCTGCTCACCTCAGTAATCTTTGCCTAAAATCACTACGTTAATCCTCTTTCCATCTGtcgagagagagggggaaggaaggagggagggaggaagagagagggttaatattGTATACAGAGTCTGATTGGCTGACGGCACTACAGTACATGAACACGGTCTGACTGGTCACTatagtacattaacactgactgactgactgactggacaatATACCACATTAACATTGACTCAGTGACTGGACACAACAGTACAATAAAATTAtacctctctctccatttctgcccccccttctctccctcactttccttttcttcctctccctcacAAGGTCACCCCCCTCTACCCCCCAGGGGAAGACACAGATAGGTAATTAAAGAAGAGATGGATGGAGGTGGAAACCTGATCCCTCCCTTCTTTactatttatgttattattattacagagaCTGTTGAGTTACAGTGATGTTTATATTACTGAATTTcttgattttgtgattttaaaaaatattgttgttgttgaaaaggTAACACTcaatttgaaagcatttttttacagCTATTGtcctaaatgtattattattattattattattattattattattattattattattattattataatcatatatatttatattgtaatgatttgatGTATATAtgcgtgtatgtgtatgtatgtatcgatcccctgctggatgaaggccttctgaaaatgtttccaCTCGCTTCTATCTaaagcttctcttttccaaatcatacctgcaaagtgtatgatttcatcttccaatACTCTATATgatcatcttctaggtctttttctAGATCTCGTGATCCttcaataacaatatttaatatttgtccACTTtttatctgttcttcttgcaacgactaattgccattttaacatgttcactcCTGACTCCTGtcaaatattttgatttgttctcagatccattcatttatttttctatatctttttgttattccatacatctttccatgctcctttgtgtcatctgcagtttctataacgtttgcattaagtgaccaggtttcacatccataagtgagcactgcattaatcaaataatcaaatttcAACCGTGTGCTGTTTCCttcaaatgcactccatcccatgtTTACTctttatttcttccataatatctccatttgcactgatttgttgtccaaggtagacataacgtTTGACTTCTTTGAGAAtttgttgatatatatatatatatatgggcatGTGCGTGTTTGAATAATGTGCaaagtatgtatatacatgtatgtaggTGTGCATGTATTGTATAAATACTAACTGTCCATATATTGTCACTGGCTTATCCCACTTAAGGAACACTGGAGTTAAGGAATGGCCACAGTGTGtagaaatgtgatgttttttgttaatgtatgtgtatatgaatTGCAATGTTGCTCCTATTTTTCATGCCAATAAAGAACAACTTtaatctgaatttgaatttaagaGTGAGAAACACCAAATGCAATTCCTTTGCATGGGACAGCTTTGAAATCCTGGAGCAACATCATGTGGCAAAGACAGGAATTACTACCAGTGAAGTAAGGGGGACACCTGGTGTCCCTTGTGAAATATTAGGAGATCAGCCTATTGTGTAAAAGACGCTGTATGACTCAGACCCCAGTTTCATTAAAGGGATGGTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65696 lncRNA upstream 64 14982123 ~ 14982509 (+) True G52497
TU65609 lncRNA upstream 151096 14766211 ~ 14831477 (+) True G52430
TU65621 lncRNA upstream 168159 14813495 ~ 14814414 (+) True G52439
TU65605 lncRNA upstream 227929 14750421 ~ 14754644 (+) True AMCG00008917
TU65552 lncRNA upstream 362290 14619961 ~ 14620283 (+) True G52384
TU65692 lncRNA downstream 42193 15026718 ~ 15027582 (+) True G52493
TU65797 lncRNA downstream 140062 15124587 ~ 15125501 (+) True G52580
TU65842 lncRNA downstream 240520 15225045 ~ 15225520 (+) True G52614
TU65847 lncRNA downstream 252177 15236702 ~ 15236924 (+) True G52619
TU65856 lncRNA downstream 262373 15246898 ~ 15247191 (+) True G52628
AMCG00008928 mRNA upstream 2820 14949880 ~ 14979753 (+) True AMCG00008928
AMCG00008921 mRNA upstream 149736 14823303 ~ 14832837 (+) True AMCG00008921
AMCG00008919 mRNA upstream 170816 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008920 mRNA upstream 187389 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008917 mRNA upstream 230916 14738449 ~ 14751657 (+) False AMCG00008917
AMCG00008930 mRNA downstream 48209 15032734 ~ 15045423 (+) True AMCG00008930
AMCG00008932 mRNA downstream 66170 15050695 ~ 15065008 (+) True AMCG00008932
AMCG00008936 mRNA downstream 113641 15098166 ~ 15099180 (+) True AMCG00008936
AMCG00008935 mRNA downstream 148811 15133336 ~ 15136021 (+) True AMCG00008935
AMCG00008941 mRNA downstream 198263 15182788 ~ 15202953 (+) True AMCG00008941
TU65619 other upstream 173287 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 187601 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 187601 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 441615 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 499318 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 871699 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1377577 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 1595338 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1687978 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 2346367 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile