RNA id: AMCG00008932



Basic Information


Item Value
RNA id AMCG00008932
length 919
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00008932
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15050695 ~ 15065008 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCCCCCGAAGAGGCCAACAGCCAGAGCTTCTGGATGccGGGGAATTACCAGCGCTGCGTGCGGCGGCCAGAGGACAGCTTCTCGTCCTGCTCAGAGCTGGTGGCCTGCTTCCAGGAGCGTGCACGTGTTGAGCGCCTTTACGCACAGCAGCTCAGCGAGTGGAGCGCCAAGTGGAAGCCCCTGGTAGATGCCAgcccTCTGTATGGTTCTCTTCTCAGGGCCTGGCAGTGCTTCCTCTCTTCAGCTGACCGCCTCTCCGCCCTGCACTCATCCATCTGCCGCTCCCTCGTCTCCGAGGATGGGGACCGTGTGCGTACCTGGCAACGCGACACCTTCCACCGCAAGCTCTTTGGCGGATTTCGCGAGTCACATGACCTGGAGAATGGCTTTGCACGCGCTCAGAAGCCCTGGGCCAAGCGGCTGAAGAAGCTGGAGAAAGCCCGGGCTGCATTCCACAAGGCAAGCAGGAAGGAGCACACAgcgcgcgagagagagagccacTCACGTGGGAATCCAGACGTTGCCATTGAGAAACAAAGGAGGAtacaagaagagagagagagtgccaCCCAGGAGACtgagagaCTGCGCGCTAGATATGAGAAGGTGCTGGAAGAAGTGACACGTTACGCTCCACGCTACATGGAAGAGATGGAGGCCGTGTTCGACCAATCACAGGAGGAGGAGCGCAAGCGTATCAGCTTCCTGAAACAGGCCTTCCTGTCCATCCACAGACACCTCGACATCACCAACAATGAGAGTGCTGTGTCAGGGGTCAAAGTTCGAGCCCTGTATGATTACACTGGACAAGAACCAGACGAGCTGAGCTTCAGAGCAGAAGAGCAGATCCATGGCACTGATGTGGAGAAACAGAAATACtggacagaagaaaaatgtaatcctCTTCCTGTCAGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65692 lncRNA upstream 23113 15026718 ~ 15027582 (+) True G52493
TU65697 lncRNA upstream 66170 14982573 ~ 14984525 (+) False AMCG00008931
TU65696 lncRNA upstream 68186 14982123 ~ 14982509 (+) True G52497
TU65609 lncRNA upstream 219218 14766211 ~ 14831477 (+) True G52430
TU65797 lncRNA downstream 59579 15124587 ~ 15125501 (+) True G52580
TU65842 lncRNA downstream 160037 15225045 ~ 15225520 (+) True G52614
TU65847 lncRNA downstream 171694 15236702 ~ 15236924 (+) True G52619
TU65856 lncRNA downstream 181890 15246898 ~ 15247191 (+) True G52628
TU65860 lncRNA downstream 217692 15282700 ~ 15283545 (+) True G52632
AMCG00008930 mRNA upstream 5272 15032734 ~ 15045423 (+) True AMCG00008930
AMCG00008931 mRNA upstream 29849 14982624 ~ 15020846 (+) True AMCG00008931
AMCG00008928 mRNA upstream 70942 14949880 ~ 14979753 (+) True AMCG00008928
AMCG00008921 mRNA upstream 217858 14823303 ~ 14832837 (+) True AMCG00008921
AMCG00008919 mRNA upstream 238938 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008936 mRNA downstream 33158 15098166 ~ 15099180 (+) True AMCG00008936
AMCG00008935 mRNA downstream 68328 15133336 ~ 15136021 (+) True AMCG00008935
AMCG00008941 mRNA downstream 117780 15182788 ~ 15202953 (+) True AMCG00008941
AMCG00008947 mRNA downstream 428720 15493728 ~ 15494128 (+) True AMCG00008947
AMCG00008946 mRNA downstream 442302 15507310 ~ 15513137 (+) True AMCG00008946
TU65619 other upstream 241409 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 255723 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 255723 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 509737 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 567440 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 791216 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1297094 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 1514855 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1607495 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 2265884 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile