RNA id: TU65737


Basic Information

Item Value
RNA id TU65737
length 873
lncRNA type sense_over
GC content 0.46
exon number 4
gene id AMCG00008934
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15032347 ~ 15057206 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTAAAAAGGCGCCATATTGGGACGATCACTCTGTTGCGCCACGCTGTAGATGgtgatacacagacagacagatggACTGTGTGGTGGGTTGGTACCTGGTGCTGTGGTCCCACAGTACATAGGGGTGTTGTGCTGTCGCCATGGGAAACACCCCTCTAAGATAATGAAGTTGGGGGAGGTACAAGTGTCCCCAGGATGGATACACTGATGTCCCAAACAGAGAGCTGACCTGACACCTCTAATCCTCCCTCCTACAGGACACACCAGCAGAGGTGGACTGTCCAGAAGCCCACAGAGAAGCAACTGTGTATAGACTGACCGATACACTGACAAATTGGTTTCAATAAAGGATAATTTTAAATTCTAATGTGCATCTTATTTTACATTCACTGTACAGACGCACAGTacgttttccttttttattaatcaatgtTACAGCATTAATTGACAAGATGGGTTCAGTAGAGTCTTTAATTTACCTTAATGCCTAATTGTCATTTTGTGCCTGTCAgtctctgcagtgtgtgtgttctgtcaGTACAGTCTACATCAGTCTGTCCTACACTCGGTCCATTTATACTATAATCCTCCCTCTTGCTCTCTAGTGTCTGTCTATATCTATTCTGTCACTTTATACAGTGTTGGTCTCTAGTTTCTCTCTTGCATGCCTCTACACAGGTCTTTTTGTCactcctccctccctgtccATCTCCCTCTGTCTGCTTTAGTCCCTGTATGTGTGTCGGTcagtccctccctctctcccctccttctctcACAGGGTGCTTCCCTGCTGTGTCTCCAGCTTCAGATCcactttcttcttctgtttctgCATCACAGTCTCCAGCTCTGTGGCACTATGAGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65718 lncRNA downstream 20611 14994916 ~ 15023128 (-) True G52513
TU65723 lncRNA downstream 37542 14994570 ~ 15006197 (-) True G52518
TU65678 lncRNA downstream 192862 14840740 ~ 14850877 (-) False AMCG00008923
TU65593 lncRNA downstream 309942 14732123 ~ 14733797 (-) True G52421
TU65589 lncRNA downstream 331353 14693830 ~ 14712386 (-) True AMCG00008918
TU65816 lncRNA upstream 120976 15169322 ~ 15172366 (-) True G52594
TU65849 lncRNA upstream 189709 15238055 ~ 15239115 (-) True G52621
TU65897 lncRNA upstream 232550 15280896 ~ 15284268 (-) True G52666
TU65916 lncRNA upstream 367599 15415945 ~ 15477937 (-) True G52676
TU65923 lncRNA upstream 378570 15426916 ~ 15428651 (-) True G52683
AMCG00008929 mRNA downstream 150512 14868827 ~ 14893227 (-) True AMCG00008929
AMCG00008923 mRNA downstream 177751 14840707 ~ 14865988 (-) True AMCG00008923
AMCG00008922 mRNA downstream 224743 14811874 ~ 14818996 (-) True AMCG00008922
AMCG00008927 mRNA downstream 238073 14800769 ~ 14805666 (-) True AMCG00008927
AMCG00008926 mRNA downstream 246262 14796350 ~ 14797477 (-) True AMCG00008926
AMCG00008933 mRNA upstream 18578 15066924 ~ 15070781 (-) True AMCG00008933
AMCG00008939 mRNA upstream 30719 15079065 ~ 15087219 (-) True AMCG00008939
AMCG00008938 mRNA upstream 61437 15109783 ~ 15112295 (-) True AMCG00008938
AMCG00008940 mRNA upstream 88057 15136403 ~ 15152205 (-) True AMCG00008940
AMCG00008937 mRNA upstream 128270 15176616 ~ 15182566 (-) True AMCG00008937
TU65310 other downstream 1059846 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1094648 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1357002 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1718512 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1734314 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 437036 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 788643 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 793318 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 793318 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 909321 15957667 ~ 15963617 (-) True G52834

Expression Profile