RNA id: AMCG00008935


Basic Information

Item Value
RNA id AMCG00008935
length 1667
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00008935
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15133336 ~ 15136021 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAttaatactgactgactgaccggACACTACAGttcattaacactgactgactggacactacagtccattaacaatgactgactgactggacactacagtacattatcaGTGCACAAGAATGTGAGAGATAGTGGAGGTAGTGAATTAGTGGTACAAAGTCTACAATGATAGAGAgtgggagatggagagagagagaaagtgacagAGACACATAGAtagggagaaagagagacagacagagtaTCTGAGAGAACCAGGCAAACAGTCACAGATACAAGAGTGCagagtgcagtgtgttgtgtttagtttagtgtgttgtgttgggttGTGTTTTGCCGTGATGGACATTCTGGAGACAGTTGCGTATGACCGCAGGAAGCACAGACACTGGGCTGCCCCTGTGCTCTCACTGGCTCTTGTCGTGCTGTATCACAATTGGGGGCGGGGCCTGGGATGTGTGCCCTGGGCACTGCTGCTGTCTGCAGGGGGAGACGCCTTTCTGATCTGGCCAGAATACTTCCTGCATGggatggTGTGTTTCGGTCTGGCCCACCTCCTCTACTgcttctccttcctctctctttgCCGTGCCTCCTCCTGCTCCCCTTGTCACCCCCTCtacctccccctctctctcagcggTGCCTCTCTCTGCTTCTACCTCTACCTCCTTCCCTTCCTGCTGAGGAGAGCGGATGCTACCATTCTTGCCCCAGCCGTGGGGGGGTACTGCATCCTCCTTGTTAGCATGGCAACCATTGCCCTGGCGACTGGCCGACCTCTGACCTGGGGGGGCGCCTTCTTCTTCATGACCTCCGACGTTGTTCTGTCCCTCCAGGTCTTTGAGGTGCTTATTGTCCCGGCAATGGTCACCAGGGCCCGGGCCATCGTCATGGTCACCTACTACCTGGGCCAGTTGCTCATTGCCGTGGGAGATGTCAGGGCAGGAAGTGAGGTCACCGCGCTTGAGGCCAGACTGGGGCCCAAGCGGAAGAGGAAGTAGTGAGAGCCAGATAGTGATCTTTGGAACCCAATACTTCAACCCCCTCTACTGTAATATTTAATTGCCTCATGCAGCCTAGTAGGGTACAGAACaatcacacacaatacagtacagagacacagtacacacatacacagtacagtacaatacaatcaCACACAGTACAGCCTTGTTGTAGagctgttattaatgttttatatgaactgtattatgttttatattgataataatatgcagactgagcaaagtagattGATCAAGCTAGTAACAGGCAATTGTTAAGggcatatcctctggacattcttctttccactttgacttctgtttttgtatgataagagaaatgggtttgtctgaattttttctgtttgtgaaatttGTGACTgtccacagacccacatgtcttgcaatgtataaaaggctgtccacttctgctgttcaataagtctcagctgaggtagagtgcttccatgttgGGGCCATtgcaggcctggcatgttaaataaatacatttatcatctATGCATCCATACTGGGTTCTTCAcctgtacatacatattttgtgtttgggGTTTACaagtgggaaaaaaatgaaaactctgATGAAAAGGATATCCCAGCTGTATTGTAGTGTAACAcaatttgataaaataaaaatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65797 lncRNA upstream 7835 15124587 ~ 15125501 (+) True G52580
TU65692 lncRNA upstream 105754 15026718 ~ 15027582 (+) True G52493
TU65697 lncRNA upstream 148811 14982573 ~ 14984525 (+) False AMCG00008931
TU65696 lncRNA upstream 150827 14982123 ~ 14982509 (+) True G52497
TU65609 lncRNA upstream 301859 14766211 ~ 14831477 (+) True G52430
TU65842 lncRNA downstream 89024 15225045 ~ 15225520 (+) True G52614
TU65847 lncRNA downstream 100681 15236702 ~ 15236924 (+) True G52619
TU65856 lncRNA downstream 110877 15246898 ~ 15247191 (+) True G52628
TU65860 lncRNA downstream 146679 15282700 ~ 15283545 (+) True G52632
TU65882 lncRNA downstream 275980 15412001 ~ 15431601 (+) True G52651
AMCG00008936 mRNA upstream 34156 15098166 ~ 15099180 (+) True AMCG00008936
AMCG00008932 mRNA upstream 68328 15050695 ~ 15065008 (+) True AMCG00008932
AMCG00008930 mRNA upstream 87913 15032734 ~ 15045423 (+) True AMCG00008930
AMCG00008931 mRNA upstream 112490 14982624 ~ 15020846 (+) True AMCG00008931
AMCG00008928 mRNA upstream 153583 14949880 ~ 14979753 (+) True AMCG00008928
AMCG00008941 mRNA downstream 46767 15182788 ~ 15202953 (+) True AMCG00008941
AMCG00008947 mRNA downstream 357707 15493728 ~ 15494128 (+) True AMCG00008947
AMCG00008946 mRNA downstream 371289 15507310 ~ 15513137 (+) True AMCG00008946
AMCG00008948 mRNA downstream 382160 15518181 ~ 15519179 (+) True AMCG00008948
AMCG00008949 mRNA downstream 383608 15519629 ~ 15522296 (+) True AMCG00008949
TU65619 other upstream 324050 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 338364 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 338364 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 592378 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 650081 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 720203 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1226081 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 1443842 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1536482 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 2194871 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile