RNA id: AMCG00008940


Basic Information

Item Value
RNA id AMCG00008940
length 3606
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00008940
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15136403 ~ 15152205 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGAGCAGGAGGGCGAGACTGTGAGAACCAGGGTGACCAAGACGGTGGTGGACGCTGATGGCACAGAGACAAAGACCACAGTTATTGCAGACAAACAGACCATGACCACCATCAAAGAAATAACCAGGGGACAAACCACATCCATCACCATGGAGACCGAGAAAGGAGAGCAGCCTGCAGAAAAGATGGAGAAAACGCAACAGAAGTCCACAGTGGTCAATGAGGATGGAAGCATTACAACAACTACAGTGATGAAAGAAGCAGACACCACGACAACCATCACACAATTCACAATGGGAGACATCACTAAGAAAACTTCAGTGGTCAAAAGAGGGGAGAAAACCACACAAACCACTCaggaaaccacaaaaaaacacaccGTGACAGGAGAAGATGGCAGCAAAACCACCACCACTGTGGTAACAAGTGACGACACCACTACAACAGTCAAAGAGGTCACCAAGGGGGACACCACAAGGGTAACCAAAGAAGTCAAGAAAGGAGACAAGCCTGTGGAGAAATCTGAAATAACCAGGAAGACATCCACTGTAGTCGATGAGGAAggcaccaccacaacaactaCGGTGGAAGAGGAAGGAGACACCACAACGATTATCACAGAAGTCACTGAGGGAGACACCACCGAGACAACAACAGAGGTAACAAAAGATGGACAAATAACAAAGACTGTCATGACAATAAGCAAAAACCCTGAGGACTACGATGACTTGTCTGAACCACAAACAGAAAGAATGACTGAAGAGATCATTGAGATAACAACTGTCAGAAAGATAGGAGATCAGTCTTCAAGCGAGGGAACAATATATGAAAATTGTGATATCACAAGGGACAAGAAAagccaaagaaaaaaatctcCAATCATCACTGAAGAAACCATAGAGAAAACCCCCATTGAAAACCCGGATGGCACCGTTACAATCATAACTGAACACACCACAGTGGAATCAACTGTCACTACTATTGAGACACTCAGAGATGTCCAGGCAGAAGACATAATTCCCAGCACCACAAAGAAATACATGGTGGTCAACGGGGATGGCAGCACCACAAAAACGACAATAATCACAGAAGGAGAAACGGTTACCACAATCACAAGAGTGAATAAAGGTGGTGTCACCAAAACCACTAAACAAGTCAAGACAAAGAACAAGCCCACACAAACCACTCAGGAaaccacagagaaacacaccATGGTGGAAAAAGATGGAAGCAAAACCACAACCACTGTGGTAACAAGTGACGACATAACTACAAAAGTCACAGAAGTCACCAAGGGGGACACCACAAGGGTAACCAAAGAAGTCAAGAAGAGGGACAAGCCTGTGGAGAAGACTGAAAAAACCAGGAAGACTTCAACTGTGGTCGATGAGGATggcaccaccacaacaactaCAGTGGAAGAAGATGGAGACACAACGACAACCATCATGGACGTCACTAAGGGAGACATCACCACAACAACCAAGAGGGTCACAAAGGCTGGGAAAACTACAACCACTACCAAAACCACCAGAAAGAggcaaataaaaagcaaaacaaaaacatttccagcTGCAGAATGGGAAAGGATTGAGGAAATCACAGAGAAAATTCCGACTGAAAATCCAGACGGCAGCATCACAGTCATTACTGAACACACCAGAGAGGGATCCACTGAGATGACAGTGGAGACACTAAGAGATATCCCTGCAGAAGAAAAACTGCCCAGCACtatcacaaaaaacacagtggTCAACGAGGATGGCAGcaccacaacaacaactgtGATCACCCGAGGAGAGACCGTCACCACGATAAAAAAAGTGACCAAAGGGGGAGTCACCAGAACCAccaaaaaaatcaacacaaaggACAAACCCACACAAACCACTCAGGaaaccacagagagacacaccgtGGTGGAAGACGATGGCAGCAAAACCACAACCACTTTGGTAACAGCTGACGACACCACTACAACAGTCACAGAGGTCACCAAGGGGGACACCACGAGTACAACCAAAGAAGTGAAAAAGGGGGACAACCCTGTGGAGAAATCTGAAATAACCAGAAAGACATCCACTGTGGTCGATGAGGAAGGCACTACCACAACAACTACAGTGGAGGAGGACGGAGACACCACCACGACCATCACGGAAGTCACTAAGGGAGACATCACCACGACAACCAAGAGCATCACAAAAGCTGGGAAAACTACAACCACTACTAAAATCAccagaaaaagacaaaagagtACCAAAAGCCAAACAAATCCTACTGTCACCGAAGAaactggaaaagaaacaatcaaaacaacGCCCATTGAAAATCCAGACGGCAGCGTCACAGTCATAACTGAACACAGCACAGAGGGATCCACTATCACTACTGTGGAGACACTCACAGACGTCCCTGCAGAAGAAACTGTTGTCAGCACCACCACGAAAAACACAGTGGTCAATGATGACGGCAGCACCACCACGACGAAAACCATCACCAGAGGAGAGACCGTCACCACGATCACAGAATTTACCAAAGGGGACCTCACCATAACCACCACAGAAATCAAGACGAAGGACAAGCCCACAGAGATTACTCAGGaagtaaagcaaaaatacaCTGTGGTAGAAGAAGATGGAAGTAAAACCACAACGACTATGGTATCAAGTGATGACATAACTAAAACAATCACAGAAATAATCAAGGGGGACATTACCAAGGTAACTAAAGAAGTAAAGAAGGGGGACAAGCCTATGGACACAATCGAATCAACACAAATTAAGAGCACAACGGTTGATGAGGACggcaccaccacaacaactaTGGTGGAGGAGGATGGAGACACCACCACGACCGTCACAGAAGTCACTAAGGGGGACATCACCACAACAACTACACAGGTCACCAAAGACGGGACAACTACATCCACTACAAAAATCACCACAAATCAGTCCAAGCCAGTAAAAGCGGAAACCTCTCCAGCTGTCACAGACGAAACCACAAAAGAAATCATCAAGACAACGCCCATTGAAAACCCAGACGGCAGCGTCACAGTCATAACTGAACACACCACAGAGGGATCCACTATCACTACTGTAGAGACACTCACAGACGTCCCTGCAGAAGAAACCGTTGCCAGCACCACCACGAAAAACACAGTGGTCAACGATGATGGCAGCACCACCACAACGACAATCATCACCAGAGGAGAGACCGTCACCACGATCACAGAGGATACCCATGACGatatcaccaccaccaccaaggAAGTCAAGACAAAGGACCAGCCCACCCAAACCACTCAGGAAACCGCAGAGAAACACACCGTGGTGGAAGATGACGGCAGCGAAACCACAACCACTGTGGTAACAAGTGAGGACACCACCACAACAGTCACAGAGGGGGGCACCACGAGTGTAACCAAAGAAGTCAAGGAGGGGGACAAGCCAGTGGAGAAGACTGAAAAAACCAGGAAGACATCCACTGTGATCGACGAGGAAGGCACCACCACAAGAACTACGGTGGAGGAGGACGGAGACACCACCACAACCATCACGGAAGTCACTAAGGGGGACATCACCACGACAACTACACAGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65736 lncRNA downstream 88057 15043739 ~ 15048346 (-) False AMCG00008934
TU65737 lncRNA downstream 88057 15043739 ~ 15048346 (-) False AMCG00008934
TU65738 lncRNA downstream 88057 15043739 ~ 15048346 (-) False AMCG00008934
TU65718 lncRNA downstream 113275 14994916 ~ 15023128 (-) True G52513
TU65723 lncRNA downstream 130206 14994570 ~ 15006197 (-) True G52518
TU65816 lncRNA upstream 17117 15169322 ~ 15172366 (-) True G52594
TU65849 lncRNA upstream 85850 15238055 ~ 15239115 (-) True G52621
TU65897 lncRNA upstream 128691 15280896 ~ 15284268 (-) True G52666
TU65916 lncRNA upstream 263740 15415945 ~ 15477937 (-) True G52676
TU65923 lncRNA upstream 274711 15426916 ~ 15428651 (-) True G52683
AMCG00008938 mRNA downstream 24108 15109783 ~ 15112295 (-) True AMCG00008938
AMCG00008939 mRNA downstream 49184 15079065 ~ 15087219 (-) True AMCG00008939
AMCG00008933 mRNA downstream 65622 15066924 ~ 15070781 (-) True AMCG00008933
AMCG00008934 mRNA downstream 79197 15032347 ~ 15057206 (-) True AMCG00008934
AMCG00008929 mRNA downstream 243176 14868827 ~ 14893227 (-) True AMCG00008929
AMCG00008937 mRNA upstream 24411 15176616 ~ 15182566 (-) True AMCG00008937
AMCG00008942 mRNA upstream 50063 15202268 ~ 15204656 (-) True AMCG00008942
AMCG00008943 mRNA upstream 149637 15301842 ~ 15328145 (-) True AMCG00008943
AMCG00008944 mRNA upstream 220340 15372545 ~ 15391050 (-) True AMCG00008944
AMCG00008945 mRNA upstream 247374 15399579 ~ 15400121 (-) True AMCG00008945
TU65310 other downstream 1152510 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1187312 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1449666 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1811176 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1826978 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 333177 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 684784 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 689459 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 689459 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 805462 15957667 ~ 15963617 (-) True G52834

Expression Profile