RNA id: AMCG00008941


Basic Information

Item Value
RNA id AMCG00008941
length 3174
RNA type mRNA
GC content 0.57
exon number 24
gene id AMCG00008941
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15182788 ~ 15202953 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGATGAGAAGCGTTGAAGTGTCCTAAGCaggtttttggtttctttcGAAAATACAAGGTATACACTGTAGCAGCTGTCCTATTCTCTGATTGGCAGATGGAATTTAGGCGGAGGAACGCTGTCCCTGTGGTGGGCGGAGCCTCTCAACCCAAGCGCTCCAGGGTGGGAGTGGACTGGGATGATGGCCCCTCTCAGTTTGAGGAGGAGCTGGCCTACATGGAGGAATCTGAGATGGCTGCGGAGTCAAGGGAGGGGCAGGCTGGGCATGATGTCATACCAGTGGggaGCCTCTTCTCTGCGGATCTGAATCCTCGCTGGCCACGCCCATCTGCACCATCCCTGGACACAGAGACCTCCCCCCTCATCTTCCAGCAGATAGACCTGGACTATTATCTGGgctCTCCAGTGTCTGGTATGCCTGGAGCCAGTCAAGGCAGCGTTCCTGTTATCCGAATGTTTGGAATTACAGACGCTGGGAGTTCTGTGTGCTGTCACATTCACGGATTTGTTCCCTACTTCTACACTCCCGCCCCCCTTGgTTTCTCTCCTGCTCACCTCAGTGATTTTCAGAAGGAGCTGAACGCGGTGGTTCTGAAGGACATGCGGTCCAACAAGGACAACCTGTCTGTCACTGTCCTTGCTGTGGACATCACAcgcagagagaGTATGTACGGTTACCACGGCAACCGCCCCTGCGACTTCCTGCGCATTACCATGGCGACGCCCCGTCTGATCGCCCCGGCCAAGCGACTCCTGGAGCAGGGCTTCAGATTCGGGAGCTTTGCCCTGCAGAGCTACAGTCCCTATGAAGCAAACATTGACTTTGAGATACGATTCATGGTGGACAGTGGTGTTGTGGGCTGTAACTGGATTGAATTGCCGGGGGGGAAGTACAGAGTGAGGGAGGAACAACATGGAGCAGACACACAAACCCCCAGCAAGgtgtctctgtgtcagtatGAGGTGGACGTGGGGTGGACAGACCTGATCAGTCACCCGGCCGAGGGGGAGTGGCAGAGAATCGCTCCCCTAAGAGTCCTAAGCTTTGACATTGAGTGTGCGGGAAGGAAAGGAGTGTTTCCTGAGGCAGAGCGGGACCCGGTGATCCAGGTGGCATCAGTGGTGCAGCAGCAGGGTCAGCAGGAGCCGGCGGTGCGCAACGTGTTCACGCTTGGCTCCTGTGCACCCATCGTGGGCTCCCAGGTGCTCTGCTTCCAAAATGAGGCTGAGCTGCTCAAGagctgGGCTGAGTTTGTGAGGACAGTAGATCCTGATATCATCACAGGATACAACATCCAGAACTTTGACCTGCCCTATCTACTGAACAGAGCCAGCACACTAAAGGTGTCTCTGTTCCCCTATCTTGGTCGGGTTCGAGGGATCCGCTCTGTCATCAAAGACTCCAGTTTCCAATCTAAGCAGATGGGCCGCAGGGAGAATAAAACTGTCAACATTGAGGGACGCGTGCAGCTGGACCTGCTGCAGGTGCTGCTGCGGGATTATAAGCTGCGCTCCTATACTCTGAACGCCGTGAGCTATCACTTCCTGCAGGAGCAGAAGGAGGACGTGCAGCACTCCATCATCACTGACCTGCAGAATGGCAATGACCAGACCCGCCGGCGCCTGGCGGTGTACTGCCTGAAGGACGCCTTCCTGCCGCTCCGCCTGCTGCAGAAGCTCATGTGTGTGGTGAACTACGTGGAGATGGCGCGTGTCACGGGCGTGCCTCTGGCCTACCTGCTCAATCGTGGACAGCAGATCAAGGTCGTGTCTCAGCTGCTGCGGCAGGCGATGAAGCAGGGGCTGGTGATGCCGGTGGTGAAGACGGAGGGGGGTGAGGATTATACTGGGGCCACCGTCATCGAGCCGGAGAAAGGCTACTACAGCATTCCCATCACCACCCTGGACTTCTCCTCCCTGTATCCCTCCATCATGATGGCACACAACCTGTGCTACACTACTCTGCTGCAACCAGGAGCGACGGAGCGCCTTGGTCTGTCCTCTGAGGACTTCATTAAGACACCTACAGGAGATCACTTTGTTAAGAGCTCAGTGAGGAAGGGGCTCCTGCCTGAAATCCTGGAGAACCTGCTGTCAGCAAGGAAGAAGGCGAAGGCGGAGCTGAAGCGCGAGACCGACCCATTCAAGCAGCAGGTTCTGGACGGGAGGCAGCTGGCCCTGAAGATCAGTGCTAACTCTGTGTATGGCTTCACTGGGGCCCAGGTGGGCAAGCTGCCCTGCCTGGAGATCTCCCAGGTGATCTATGGGGACACGGACTCTGTGATGGTGCGGCTGGGGGTCAGTGAAGTGCGGGAGGCCATGGCTCTGGGCAGGGAGGCAGCGGAATGGGTCTCCAGCCACTTCACCCCTCCCATTAAACTGGAGTTTGAGAAGGTTTATTACCCGTACCTCCTGATCAATAAGAAGCGCTACGCTGGTCTGTACTTCTCCTCGAACCCGGACACCCACGATAAGATGGATTGTAAGGGTATAGAGACAGTGCGCAGGGACAACTGCCCCCTGGTGGCCAACCTGATCAACTCCTGTCTGCAGAGTATCCTCATAGACAGGGACCCTCAGGGTGCAGTGACCCATGCCCAGGAGGTGATCAGTGACCTGCTGTGTAATCGCATTGACATCTCCCAGCTAGTCATCACCAAGGAGCTGACCCGCGCAGCCGGGGAGTATGCAGGGAAGCAGGCACACGTGGAGCTGGCAGAGAGGTCCGCCATGCGCCCCCCCCATCCGCCCTACTCACTgatgaGGAAGAGGGACGCAGGCAGTGCCCCTAACCTGGGAGACCGTGTTCCCTATGTCATCATCAGAGCCACCAAGGAGGGGGAGCACACTCGCTGTAAGACAGTGCTGACGTCCAGGGTAGGGGGGCTGTCGGCCTTCACTCAGAAGAGGAGCACCTGCATCGGCTGCAAGAGCGTCCTGAATAGCAACTcggcTGTATGTGATTTTTGCAAGAGCAAAGAGTCTGAACTGTACCAGAAAGAGCCCACTCGCTCACTCTGTATCAGACACTATCTCTCCAGTCACTCCACTGAAGCCCAGATCAGGAGCGGCCAGGGCAGCGGCAGCCATGGTGTTGACATTGTTGGGGGCCAGAGGGCAAAGGTCATGCACTGGCCCCGAGAACAGGACATGCCTGCCCTCGCCCTCTGA

Function

GO: NA

KEGG:

id description
K02327 POLD1; DNA polymerase delta subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65797 lncRNA upstream 57287 15124587 ~ 15125501 (+) True G52580
TU65692 lncRNA upstream 155206 15026718 ~ 15027582 (+) True G52493
TU65697 lncRNA upstream 198263 14982573 ~ 14984525 (+) False AMCG00008931
TU65696 lncRNA upstream 200279 14982123 ~ 14982509 (+) True G52497
TU65621 lncRNA upstream 368374 14813495 ~ 14814414 (+) True G52439
TU65842 lncRNA downstream 22092 15225045 ~ 15225520 (+) True G52614
TU65847 lncRNA downstream 33749 15236702 ~ 15236924 (+) True G52619
TU65856 lncRNA downstream 43945 15246898 ~ 15247191 (+) True G52628
TU65860 lncRNA downstream 79747 15282700 ~ 15283545 (+) True G52632
TU65882 lncRNA downstream 209048 15412001 ~ 15431601 (+) True G52651
AMCG00008935 mRNA upstream 46767 15133336 ~ 15136021 (+) True AMCG00008935
AMCG00008936 mRNA upstream 83608 15098166 ~ 15099180 (+) True AMCG00008936
AMCG00008932 mRNA upstream 117780 15050695 ~ 15065008 (+) True AMCG00008932
AMCG00008930 mRNA upstream 137365 15032734 ~ 15045423 (+) True AMCG00008930
AMCG00008931 mRNA upstream 161942 14982624 ~ 15020846 (+) True AMCG00008931
AMCG00008947 mRNA downstream 290775 15493728 ~ 15494128 (+) True AMCG00008947
AMCG00008946 mRNA downstream 304357 15507310 ~ 15513137 (+) True AMCG00008946
AMCG00008948 mRNA downstream 315228 15518181 ~ 15519179 (+) True AMCG00008948
AMCG00008949 mRNA downstream 316676 15519629 ~ 15522296 (+) True AMCG00008949
AMCG00008955 mRNA downstream 396378 15599331 ~ 15608308 (+) True AMCG00008955
TU65619 other upstream 373502 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 387816 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 387816 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 641830 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 699533 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 653271 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1159149 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 1376910 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1469550 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 2127939 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile