RNA id: AMCG00008946


Basic Information

Item Value
RNA id AMCG00008946
length 1920
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00008946
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15507310 ~ 15513137 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAGAGCTCTGGTATGGAGGATTACTACTTTGACTCCTACGCCCACTTCGGCATTCATGAGGAGATGCTGAAAGATGAGGTGCGTACACTGACCTACAGGAACTCTATGTTCCACAACAAGCATCTGTTCCGGGACCGTGTGGTGCTGGACGTGGGCAGTGGCACCGGCATCCTGTGCATGTTTGCTGCAAAGGCGGGTGCCAAGAAGGTCATCGGGGTCAGTGTCAAGTCTGTTCATGTGTCAAGTCTGTGCGTGGCTGGAGCCAAGAATGTCATTAGATTGAGTGCTCCAGCATCTCTGATTACGCGGTCAAGATTGTTAAAGCCAACAAACTGGACCACAAAGGTGGATATCATCATCTCCGAGTGGATGGGCTACTGCCTCTTCTACGAGTCCATGCTCAATACGGTCATCTACGCAAGGGACAAGTGgctgAAACCAGATGGGTTGATATTTCCTGACAGAGCCACTTTGTACGTCACTGCCATTGAGGACCGCCAGTATAAAGACTACAAGATCCACTGGTGGGAGAATGTCTATGGGTTTGACATGTCCTGCATTAAGGACGTAGCCATCAAGGAGCCTCTAGTAGATGTGGTGGACCCCAAACAGCTGGTGTCTTCGGCATGTCTCATCAAGGAGGTGGATATCTACACAGTGAAGATTGAGGACCTGTCCTTCACCTCGCCCTTCTGCCTGCAGGTGAAGAGGAACGACTACATCCACGCGCTCGTCACCTACTTCAACATTGAGTTCACACGCTGCCACAAGAGGACCGGCTTCTCAACCAGTCAGTGCACCTTGctctgtACGGGCGAGGAGATATTTGGAACGATCAGCATGAAGCCCAATGTCAAGAACAACcgTGATCTGGACTTCAATGTGGACATTGACTTCAAGGGACAGCTGTGCGAGGTGTCGAAGACATCAGAGTACAGGATGCGCTAGAGGAAGAGGAGGGTGCAGGAGACCTGGCCgaggggaggaggagagcaaACTGCACACAAGAATTGAATAGAGAGATGTACACTCAAACTAGATGCATGGAGAGGTGGAATAATGGTtacagagggagggggaggagagatgCATGTGGGCTGGAGGAGTAGAggagcaatatatatataatttttttttgtccttttattTGTGTGCCCCTCTCGTCTGTGTTAGTATCAAAGAATTTGGATCCATCGAGTTCCAAGTCTCCGCAGCTCCCTAGctgcccccacctcccccccacacattATTGTGCACAATTTCCCAGAATGCAATTTCTCATCTCGTCTAGTCAGAATcgtattataattaattttggtGTATAAGCTGTAGCTTTTTAAGACCTTGGTATTTGCGCCACACACCgacagacacacaaatggaGACGCACTAATGCTTGCTACCAGTCATACATACACCTGCAGATTCGCACACCAATCTCGTGTTATACACCCCACAATGACCATATCAGTATGCCAGCTGTGTGCCTGGTTACCTTCCACCACACTTTGGAGAATTTGAGAATTAGTGTGTGGGTTGGTCAGTTACTGGCTCTATTGACCACAGCACTGTCCCCTGCCAGGGCCTGCAGTTGGGGTCACCAGATGACCGTGATCTCATAGTTCAGCTGTTCACAACAAGCACTCTGGTCGCCTTAGTACTACTATAGTGTGTGTAGTTAATTTTTggtttcccccctccccctgtagaataatttgaaatgatcaaatgtttaaatttgcAAGAGGAAGTCCTACAGTACTTACTCACTGTACAATAACTCCTTTTTACCAGTCTGTGAGTAGAGTCAGCGTTTTATATTGTAGTGGGGTTTGTCAGTCTCTCCCCCTCTGCCCTCTTCCCTAATTTATtatggagggaggggggggagagtggagagggagaagggaagaG

Function

GO:

id name namespace
GO:0043985 histone H4-R3 methylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016273 arginine N-methyltransferase activity molecular_function

KEGG:

id description
K11434 PRMT1; type I protein arginine methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65882 lncRNA upstream 75709 15412001 ~ 15431601 (+) True G52651
TU65860 lncRNA upstream 223765 15282700 ~ 15283545 (+) True G52632
TU65856 lncRNA upstream 260119 15246898 ~ 15247191 (+) True G52628
TU65847 lncRNA upstream 270386 15236702 ~ 15236924 (+) True G52619
TU65842 lncRNA upstream 281790 15225045 ~ 15225520 (+) True G52614
TU65931 lncRNA downstream 398 15513535 ~ 15514018 (+) True G52691
TU65970 lncRNA downstream 114703 15627840 ~ 15703015 (+) True G52717
TU66036 lncRNA downstream 250800 15763937 ~ 15764143 (+) True G52766
TU66055 lncRNA downstream 323848 15836985 ~ 15837809 (+) True G52781
TU66090 lncRNA downstream 366920 15880057 ~ 15895419 (+) True G52798
AMCG00008947 mRNA upstream 13182 15493728 ~ 15494128 (+) True AMCG00008947
AMCG00008941 mRNA upstream 304357 15182788 ~ 15202953 (+) True AMCG00008941
AMCG00008935 mRNA upstream 371289 15133336 ~ 15136021 (+) True AMCG00008935
AMCG00008936 mRNA upstream 408130 15098166 ~ 15099180 (+) True AMCG00008936
AMCG00008932 mRNA upstream 442302 15050695 ~ 15065008 (+) True AMCG00008932
AMCG00008948 mRNA downstream 5044 15518181 ~ 15519179 (+) True AMCG00008948
AMCG00008949 mRNA downstream 6492 15519629 ~ 15522296 (+) True AMCG00008949
AMCG00008955 mRNA downstream 86194 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008953 mRNA downstream 109681 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008952 mRNA downstream 120586 15633723 ~ 15640935 (+) True AMCG00008952
TU65619 other upstream 698024 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 712338 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 712338 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 966352 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 1024055 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 343087 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 848965 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 1066726 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1159366 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1817755 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile