RNA id: AMCG00008949


Basic Information

Item Value
RNA id AMCG00008949
length 471
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00008949
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15519629 ~ 15522296 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTTGCCCTCCTTCCTTATGCCTATACAGCAACTCCACAGACTCTTGAACCTCATCCACCAGTGGAGTCTGGCCCTGCGCATTATTATGGACTCACTTTCACTGGAACTTCACCTCAAGCTGCAATACCCCAAAGAGGCCAGCAGAGGCATCACCAGGAAACAGTTCAAGGCCAAAGTACTGACAGACACTGAGACCCAGATAGCTGAGTCACCTCAACAGAGAAGCAGGAGAAGACAACCTGGTGTTGTACACCACACTGCCTGGCACCAAGCACTCCCTCAACACTACACACCACACTGCCTGGcacaacacactctcacagaaCTACGCACAGGTGAGGAGGAGAGGATTTGTCCCTGCACTGAGGACACAGACAGCACCACACTGACCCTAAGCGTGTACAACAATGGCACAATGACAATCCAGGGTAGCAAGAGCTTCGGACATGGCTTCCACACACTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65931 lncRNA upstream 5611 15513535 ~ 15514018 (+) True G52691
TU65882 lncRNA upstream 88028 15412001 ~ 15431601 (+) True G52651
TU65860 lncRNA upstream 236084 15282700 ~ 15283545 (+) True G52632
TU65856 lncRNA upstream 272438 15246898 ~ 15247191 (+) True G52628
TU65847 lncRNA upstream 282705 15236702 ~ 15236924 (+) True G52619
TU65970 lncRNA downstream 105544 15627840 ~ 15703015 (+) True G52717
TU66036 lncRNA downstream 241641 15763937 ~ 15764143 (+) True G52766
TU66055 lncRNA downstream 314689 15836985 ~ 15837809 (+) True G52781
TU66090 lncRNA downstream 357761 15880057 ~ 15895419 (+) True G52798
TU66093 lncRNA downstream 373134 15895430 ~ 15898067 (+) False AMCG00008965
AMCG00008948 mRNA upstream 450 15518181 ~ 15519179 (+) True AMCG00008948
AMCG00008946 mRNA upstream 6492 15507310 ~ 15513137 (+) True AMCG00008946
AMCG00008947 mRNA upstream 25501 15493728 ~ 15494128 (+) True AMCG00008947
AMCG00008941 mRNA upstream 316676 15182788 ~ 15202953 (+) True AMCG00008941
AMCG00008935 mRNA upstream 383608 15133336 ~ 15136021 (+) True AMCG00008935
AMCG00008955 mRNA downstream 77035 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008953 mRNA downstream 100522 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008952 mRNA downstream 111427 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008954 mRNA downstream 119395 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008960 mRNA downstream 337268 15859564 ~ 15863670 (+) False AMCG00008960
TU65619 other upstream 710343 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 724657 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 724657 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 978671 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 1036374 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 333928 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 839806 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 1057567 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1150207 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1808596 17330892 ~ 17339674 (+) True AMCG00008995