RNA id: AMCG00008950


Basic Information

Item Value
RNA id AMCG00008950
length 2601
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00008950
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15514634 ~ 15528761 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggGAAGTGTCATGACCACTCAGGGTGCCACAATTACATCGTACCCTCACTcTATTAACTGCACCCAGCAGAACTGGACAGTCACTACGACAACCATCAAAGGGGTCATCATGGGTGATTTCACTGAGGGCAAGGCAACCAAGGATGGACTTGAGATTCCTGCCAATAGATATGGAGACACCATAGAATTCATGAACTGGACTCGCCCTAGTGGCTGTGTCAAGGAGTACAGTGTGTACAACAACATAACTAATATCTTCAATGTTTCCGAGAACACAAATAGTAAGACTATTGAAAATCTCACCCCGGGCACAGTCTATAACATCACAGTGGTCACTCTGGGAGACGGAGAGAGCTCTGAGCCAGCCACTAAACTAGAAAACACAGgtCTGGACTGCAACTCTCTGACATGGAGTCCAGGTGTGGGGTCACTGGAGGTGGTGCTGACCCATGGGCAGGTCAGCAGGGTGTCTGCCCAAAATACAGACGTCACTGTGGTCAACGCCACTCTGTCTGGGAGCAAGGCGAATGTCAGCGGACTGGACCCAGGCTGCAACTacaatgtgtcagtgtggagCTGGATAGACACTGTACTGTGCACCAGACAGCAGGGCCTggAACCCAGCCACCCACTAATTCTCCAGATCAATACCACCAGTAACAGCGTGCATGTAAACTGGGCTGCCCCACACAGTACCGACCTAAACTACAAGCAGTACAGCTACTGGGTTGAGTGTGTCCGGACCACACAGTCCACTGACAACTGCACAAAAACCACTAAGCTCCTCTTCATTGACTTTAGTTTCCTGCATCCCGGGGAGTTGTACAATGTCACAGTGAGATCAGAGTTCAACAACATCCAGGGCGAGCCCATTACAGTTCAAACACTAACCAACCCTCTAAGCCCCACTAACTTCTCAGTGTCCACAGTCTCTGTCCACAATGCCTCTCTGTCCTGGCGAAAGGTGCCGGCTGATGCATCTGGGCTTACCAACTACCTGGTCACCTACATCTCACCCAGTGAAATAAAAAGTATCACCTCAGACACTGACCAGCTGACCCTGAGTGAGCTGACCCCAGGCCAGAACTACAGCGTATCACTGGTCAGTGTGGTCACTGCAGGGCAGCTGACCAAATACAGTGAGGTCCAGCACTCACGCTTCCAGACTTGGGTGTGGCAAGGGGTCAGAGTTCACCTATCTGGGTCAGGCAGCCCACAGCAAACTGTGCCCAGCAACACCATGGCAACCAGCTTCAAGGGACTACAGCCAGCTCGCAATTATAACATAATGGTGAAGGCATTCTCTGGGGACAAGTTCAGCCAGGGAGTGGTGGTGGTGTGCAAGACAGACCCCGCAGATGACTGGTCCAGAGTGAAGTTGAAGGGGGTGAACACTCTCGTCATGCTGACCTCCTGCATCGAGGGCGGGCGGGGCAGTGAGGTGCGCTCGCTCACACAGTTTCATTTCACCGCCTGGCCTGATCACGGGGTGCCGGAGGGGACCAGTCCACTGACACGCTTCCGAACGCTGTCTCAGTACATCTTCCTCCATCAGTGTCTGCTGGACTCTCTGTGCTCACCGCCCCCCCCAACTCTCGACGAGTCCATCTACGAGAATACCGACATGCTGTATGTCAACGCCACCGTCCTGCGCCAGATGGGCCTGGCCAACAGTGGCACTGACATGATTGATGGCCCCTGCCAGCCAATcaagagggaggaagggagaggggcAGGCATGTCTGTACCAGCTCACTTTTTCAATGGATAGAGATATATTTTTGCAGCTGTGTGCCCTGTAATGAAACTGTTCAGCCTTCTACCCTCTCAATTAAGATTCAGTCTCATTGTAGAATGAATAGGTACTCCCTTGTTATGAagctaaaatatttattttaaataattgtttaaaccAATAAGTTTCTAGGTTAATGAAtgatacacactgcactgcaccctTCACTGTTCAATACTGCCCCCACCTGTGCAGGCAGCACAACTACGAGTTCTGAAATTACTACAGTACTGgatggtgatttattttttcacattgacCTAATCTAGCATCAACATGTCTGTGCTTGGTGTGTGTATAGGTAGAGCAAGGAAGCAAATATGGTGCCCTGAACTGTGTCTGCTGATCAGAATGAGTGGCTTGGTGTTTGTTCTAATCACTCATGTCTCAAAGATGTTCTTTTTTTGCCAAAAAAATCTATCACAAAGCTGACCCATCCACCCTATACCCCAGATTTGCCCCCCTTGTGACTTTTGGCTATTATCAAAATTTGAAAACCTCTTTGAAGTGCCAAAGATTTTCAGACATTTCTGACATCCAAAAACATATCCTAAAGGGCATCCCAGAAGAGGAGTTCAGGACTGTTTTCAGCAATGGAAACATCAAAGCAGCAAAAGTATTGCTGCCAAACGAGACTACCTGGAAGGTAATACCAACCTTCGGTGCATAAGTAATAAAATGCAACTTTCAGGTGGACATTCCAGAACCTTTATTGTcagaacatttttattcttctattcttcttctatttttgttcttcttgttcTGATTTTGTGATAAGAGTGTACATGTGTTTTCATggtaaa

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65933 lncRNA downstream 1411 15507248 ~ 15513223 (-) True G52692
TU65916 lncRNA downstream 36697 15415945 ~ 15477937 (-) True G52676
TU65923 lncRNA downstream 85983 15426916 ~ 15428651 (-) True G52683
TU65897 lncRNA downstream 230366 15280896 ~ 15284268 (-) True G52666
TU65849 lncRNA downstream 275519 15238055 ~ 15239115 (-) True G52621
TU66004 lncRNA upstream 75064 15603825 ~ 15623991 (-) False AMCG00008957
TU66005 lncRNA upstream 75064 15603825 ~ 15610700 (-) True AMCG00008957
TU66009 lncRNA upstream 75064 15603825 ~ 15623991 (-) False AMCG00008957
TU66047 lncRNA upstream 292425 15821186 ~ 15822218 (-) True G52774
TU66080 lncRNA upstream 330762 15859523 ~ 15863705 (-) True G52793
AMCG00008951 mRNA downstream 28764 15469674 ~ 15485870 (-) True AMCG00008951
AMCG00008945 mRNA downstream 114513 15399579 ~ 15400121 (-) True AMCG00008945
AMCG00008944 mRNA downstream 123584 15372545 ~ 15391050 (-) True AMCG00008944
AMCG00008943 mRNA downstream 186489 15301842 ~ 15328145 (-) True AMCG00008943
AMCG00008942 mRNA downstream 309978 15202268 ~ 15204656 (-) True AMCG00008942
AMCG00008956 mRNA upstream 13701 15542462 ~ 15596322 (-) True AMCG00008956
AMCG00008957 mRNA upstream 78182 15606943 ~ 15639130 (-) False AMCG00008957
AMCG00008958 mRNA upstream 120783 15649544 ~ 15660496 (-) True AMCG00008958
AMCG00008959 mRNA upstream 139055 15667816 ~ 15685050 (-) True AMCG00008959
AMCG00008963 mRNA upstream 259784 15788545 ~ 15801373 (-) True AMCG00008963
TU65929 other downstream 9117 15485382 ~ 15505517 (-) False AMCG00008951
TU65310 other downstream 1530741 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1565543 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1827897 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 2189407 13320274 ~ 13325227 (-) False AMCG00008860
TU66056 other upstream 308228 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 312903 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 312903 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 428906 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 535464 16064225 ~ 16073935 (-) True AMCG00008971

Expression Profile