RNA id: TU65929


Basic Information

Item Value
RNA id TU65929
length 855
RNA type TUCP
GC content 0.45
exon number 2
gene id AMCG00008951
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15469674 ~ 15505517 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGGCAGCTTCGCCCCCTGGTCACGAGAGCCGCGGCGAGGTCTTAGGCATCCAGACTAGCTGAGAATTTTACaacaattaaattcaattataCGATTTGTACAATTAAAATCGATCAGTTAATACCAGAGAggggatatatgtatatatatgtatgtgcagACAGCGGTTGGCAAAACGGGAAgaatcattttgattttaaatagctGATCAAGGGAAACGGTGCTATCTGGATCAGAAAAATAAGGCATTTGatgctgatttgtttttatagtaaCTGGAAAACCCGACGGGACGCAtcttaaagaataaaaaataagcaatacaacATACACGAAATATAAGTCCTATAGAATAATCAATAGGTTCTCATTAACCCGTGTTGTTGTGGATGAGCTGCGCCGGGGGGCAGACGGAGATCAGAGCATTTGCTCGTCTGTTTTTTTATCTgtagtttatttctttgtgtggTGCTTTCAGCCGGATAACAGCGGACATatctctcttcttcttcatcatATTATTTATCGGTCGGCGTTGCGTTGTGTCGTCTGTAGCAGCACAGACAAGTCAAGATGCCGGCCGTATCCAAAGGCGACGGGATGCGCGGATTAGCGGTGTTCATCTCCGACATCCGCAACTGTAAGAGCAAGGAGGCAGAGATCAAGCGCATCAACAAGGAGCTCGCCAACATCCGCTCCAAATTCAAGGGTGACAAGGCACTGGATGGCTACAGCAAGAAGAAGTATGTGTGCAAACTGCTGTTCATCTTCCTGTTGGGCCATGACATCGACTTCGGCCACATGGAGGCCGTCAACCTGCTGAGCTCCAACAAGTACACAGAGAAGCAGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65916 lncRNA downstream 7445 15415945 ~ 15477937 (-) True G52676
TU65923 lncRNA downstream 56731 15426916 ~ 15428651 (-) True G52683
TU65897 lncRNA downstream 201114 15280896 ~ 15284268 (-) True G52666
TU65849 lncRNA downstream 246267 15238055 ~ 15239115 (-) True G52621
TU65816 lncRNA downstream 313016 15169322 ~ 15172366 (-) True G52594
TU65933 lncRNA upstream 1731 15507248 ~ 15513223 (-) True G52692
TU66004 lncRNA upstream 98308 15603825 ~ 15623991 (-) False AMCG00008957
TU66005 lncRNA upstream 98308 15603825 ~ 15610700 (-) True AMCG00008957
TU66009 lncRNA upstream 98308 15603825 ~ 15623991 (-) False AMCG00008957
TU66047 lncRNA upstream 315669 15821186 ~ 15822218 (-) True G52774
AMCG00008945 mRNA downstream 85261 15399579 ~ 15400121 (-) True AMCG00008945
AMCG00008944 mRNA downstream 94332 15372545 ~ 15391050 (-) True AMCG00008944
AMCG00008943 mRNA downstream 157237 15301842 ~ 15328145 (-) True AMCG00008943
AMCG00008942 mRNA downstream 280726 15202268 ~ 15204656 (-) True AMCG00008942
AMCG00008937 mRNA downstream 302816 15176616 ~ 15182566 (-) True AMCG00008937
AMCG00008950 mRNA upstream 9117 15514634 ~ 15528761 (-) True AMCG00008950
AMCG00008956 mRNA upstream 36945 15542462 ~ 15596322 (-) True AMCG00008956
AMCG00008957 mRNA upstream 101426 15606943 ~ 15639130 (-) False AMCG00008957
AMCG00008958 mRNA upstream 144027 15649544 ~ 15660496 (-) True AMCG00008958
AMCG00008959 mRNA upstream 162299 15667816 ~ 15685050 (-) True AMCG00008959
TU65310 other downstream 1501489 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1536291 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1798645 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 2160155 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 2175957 13307422 ~ 13309425 (-) True G51974
TU66056 other upstream 331472 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 336147 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 336147 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 452150 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 558708 16064225 ~ 16073935 (-) True AMCG00008971

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050221 False 5380 mRNA 0.48 21 NC_007114.7 32365811 ~ 32401481 (+)