RNA id: AMCG00008952


Basic Information

Item Value
RNA id AMCG00008952
length 1642
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00008952
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15633723 ~ 15640935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAGGTGAAGACTCTCTGCAATGCGATTGGTTAGCTCCCGGAAAGTGAGGGCGATGGCAAGGCGTTCGGTAGAGGCCCCGCCCCAAGACACCGAGCACGTTAACAATGAGACAAGTACCCcgcttcacacacacaaagaccaCTTCAGCAGCATGAAGAACAAGTTCATGAACGAGCTGGGGAGACTGCCCATGATGGTGCTGTGTGTCCTGGTGGTCTGCTGCGTGCTCTGCGTGCTGAAGAAGTGCTGTGCTAAGAAGAAGAAGGGCAAGAAAGCGAGGGATAAGAAGAAAGAGATGAACAagaagaaggagggagaggaggggaccAACAGTACAGAGAAGGCGATGGACATGGGGGGCACCTCTGACCCCTACGTCAAGGTTTACCTGCTGCCTGACAAGAAGAAGAAGTTCGAGACCAAAACCCTGGTGATGGCCGTCTTCGACTTCGACCGCTTCTCCAAACATGACACCATTGGAGAGATCAAGCTGCCCATGAGCAGCCTGGACCTGGGGCAGCCCATACAGGACAAGAAAAGCTGGAATGGGAAGCGactcaagaagaagaagacgacAATTAAGAAGAACACACTGAACCCCTATTACAATGAGAGCTTCAGCTTCGAAGTCCCTTTCGAACAGATACAGaagGTGCAGGTGGCAGTGACAGTGCTGGACTATGACAAGCTGGGGAAGAACGATGCCATAGGAAAGGTGTTTGTGGGCTGTGGCTCCTCGGGGACGCAGCTCCGCCATTGGTCAGACATGCTGGCCAATCCGCGGCGGCCAATTGCGCAGTGGCACACATTGCAACCTGAGGAAGACATCGACTCCATCCTGCAGGGCAACCCCCGCTGACCTCGCTCTCTACCCTCCACTGACCTCACATCCTGTCCCCTTAACATCACTTCCTGACTGGTGCTGACTTCACTTTCTGTTCTCCTGACATCACTTCGTGCCCGGCACTGACCTCACTTCCTGTCCCCTTACATTAACAACTCATCCTTCCCCCTTCGTGCTGACCTCATTTCCTACACTCCACTGACATCACTTCCTGCCTGTCAGTCAACTTTCCCCACTTtccatctgtctgtgttttttaaaaatacttccaTATAGCATCAGTATAAAATCACCTTTAACCCACTACAGTGCTGATGTCACTTCCTGACTGCCACCTTTAAGGGGATGTCTCATTGAATTTACTTCCTATAAGCAGCCCTTTGTGTGGCAGTGGTTTTATTCTGATttttgttgtgtgctgtgtagctgtgtgtgtttctgtacacTCCCAGGCTGTGTACTCTGTGTTGGTGCTGccccattctctctccctctctcacaatGCAGTTATAAGCACTGTGATGTTGTATAATCCATTGATCTGTATTAAAATACAGGAGAAGCATTTCAGTAGGGGGACACATATAGAgtgttggagagagagagagagagagagagagagagagagagagagagagagagagaagagggtgTCAGACCCTGAGTATTAAACAGAACTGGACTGGAGAGAGGGAATGAGatggaggaagggagaggggaaggggagagagagggagatcaGAGAgattttgtgtctgtctgtaaacTGATCAGTATGCTAGACTATTAAACTGAC

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65931 lncRNA upstream 119705 15513535 ~ 15514018 (+) True G52691
TU65882 lncRNA upstream 202122 15412001 ~ 15431601 (+) True G52651
TU65860 lncRNA upstream 350178 15282700 ~ 15283545 (+) True G52632
TU65856 lncRNA upstream 386532 15246898 ~ 15247191 (+) True G52628
TU65847 lncRNA upstream 396799 15236702 ~ 15236924 (+) True G52619
TU66036 lncRNA downstream 123002 15763937 ~ 15764143 (+) True G52766
TU66055 lncRNA downstream 196050 15836985 ~ 15837809 (+) True G52781
TU66090 lncRNA downstream 239122 15880057 ~ 15895419 (+) True G52798
TU66093 lncRNA downstream 254495 15895430 ~ 15898067 (+) False AMCG00008965
TU66120 lncRNA downstream 312113 15953048 ~ 15955372 (+) True G52817
AMCG00008953 mRNA upstream 10320 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008955 mRNA upstream 25415 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008949 mRNA upstream 111427 15519629 ~ 15522296 (+) True AMCG00008949
AMCG00008948 mRNA upstream 114544 15518181 ~ 15519179 (+) True AMCG00008948
AMCG00008946 mRNA upstream 120586 15507310 ~ 15513137 (+) True AMCG00008946
AMCG00008954 mRNA downstream 756 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008960 mRNA downstream 218629 15859564 ~ 15863670 (+) False AMCG00008960
AMCG00008965 mRNA downstream 255772 15896707 ~ 15910151 (+) True AMCG00008965
AMCG00008967 mRNA downstream 290381 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008966 mRNA downstream 302222 15943157 ~ 15951025 (+) True AMCG00008966
TU65619 other upstream 824437 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 838751 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 838751 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1092765 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 1150468 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 215289 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 721167 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 938928 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1031568 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1689957 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000327_01510068_01515647.mRNA False 2013 mRNA 0.40 7 CI01000327 1509263 ~ 1515784 (-)