RNA id: AMCG00008954



Basic Information


Item Value
RNA id AMCG00008954
length 1181
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00008954
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15641691 ~ 15650273 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCTCCTGCGTCAGTCTCCAAGATCAACGGAAACGACACCCTAAAGCCTTTAGCGGTTGCCAAGCAACAGGCAAACGAAGAGGCGTGCGCAAAGTATTTCAGTGCTCGACACAtgtgtgggCCTGCCAGGCATCAGGGGGAGGCCCGGCTGCGGGGGCACCTGGGCAGCAGGTTCGACTCTCGGCTTGGATCCTTCGACTGGGATCTGAGGATGAAGCTGCACGACAGAGGGAGCTGTTGTGTGTGGACAGGGTACATTTTAGACCTCTCTTGTGAGCAACAGCAGGGATTCACCAACAGTGTGATTGACAGGGCCAAGGAAGCAGGGTTTGAGCCAGTGGACGGGAGCAGTGATGTCTTTGCCCACTTCCAGCTCCACAACCCTTCACCCGCAacctctgacccctgacctttTAGCAGGGAGTGAAGAGTAGCTATTTGTTTGGCATGGGGGGGCTCTCCCTCAATTTTTCTCTGAATTTCCCTGtacctctctcactctctacTTCCTCCTCTCCTTTCTCATCCCCACCACTCCCCAATCCCtccccagtgtgtcagtgcacagtcattgagagacagagactaTCTTCATTGTTCAACTCTAACATTTATCATCTTTATTGTTGTCACTACAGAGACAGatgaagagagggagggagagggggctaTGGgaaatagagagagggaggaggagaaaggaTTGTGTCATTAAAGGCCGTCTTCAAAATGGAAAGCAGAATCAAAACTATTGTCATCTTTTTAACCCCCCATCTGTCacttcttttctttcatttttctattctttcatttcttctttACTTCCAGCGCCCCCCCACCTTCCCCTTGCCTGCACCCTTCTTGCTGTTGGCAGAAATGggagaatgagagagggagggagagatcaGGTTAGAGCAACTGTGTGTAAAGACACATGAAACagtgtacagacacacacacacagacatacattcacacattttaCTCACAATTTCTGGGCGTGACAGATTCGGTTTAAGAGAACGTTGATCTGTAAAGAGACAGAGTGTTATTATGGACTGCTGTCATTATGGaaagattgttattattattattaatagtgtGTTTTACTGTTGTGTCAATAAAGCTACTTTGAACTACATGAAACTGAAATgctcacactgactgactgaacccAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65931 lncRNA upstream 127673 15513535 ~ 15514018 (+) True G52691
TU65882 lncRNA upstream 210090 15412001 ~ 15431601 (+) True G52651
TU65860 lncRNA upstream 358146 15282700 ~ 15283545 (+) True G52632
TU65856 lncRNA upstream 394500 15246898 ~ 15247191 (+) True G52628
TU65847 lncRNA upstream 404767 15236702 ~ 15236924 (+) True G52619
TU66036 lncRNA downstream 113664 15763937 ~ 15764143 (+) True G52766
TU66055 lncRNA downstream 186712 15836985 ~ 15837809 (+) True G52781
TU66090 lncRNA downstream 229784 15880057 ~ 15895419 (+) True G52798
TU66093 lncRNA downstream 245157 15895430 ~ 15898067 (+) False AMCG00008965
TU66120 lncRNA downstream 302775 15953048 ~ 15955372 (+) True G52817
AMCG00008952 mRNA upstream 756 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008953 mRNA upstream 18288 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008955 mRNA upstream 33383 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008949 mRNA upstream 119395 15519629 ~ 15522296 (+) True AMCG00008949
AMCG00008948 mRNA upstream 122512 15518181 ~ 15519179 (+) True AMCG00008948
AMCG00008960 mRNA downstream 209291 15859564 ~ 15863670 (+) False AMCG00008960
AMCG00008965 mRNA downstream 246434 15896707 ~ 15910151 (+) True AMCG00008965
AMCG00008967 mRNA downstream 281043 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008966 mRNA downstream 292884 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008970 mRNA downstream 341840 15992113 ~ 15992550 (+) True AMCG00008970
TU65619 other upstream 832405 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 846719 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 846719 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1100733 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 1158436 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 205951 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 711829 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 929590 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1022230 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1680619 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile