RNA id: AMCG00008955


Basic Information

Item Value
RNA id AMCG00008955
length 1828
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00008955
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15599331 ~ 15608308 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGCTCACTATTTCGCCAGGGATGATGTGGCCCTGCATGGGTTCTCGCACTTCTTCAAGGAGAACagtgaggaggagagggagcaTGCTGAGAAGCTGCTGTCCTTCCAGAACAAGAGGGGGGGGCGAGTGGTGCTGCAGGACGTCAAGATGTGTGACTTCCTGGAGACCCATTACCTGAACGAGCAGGTGGAGGCCATCAAGAAGCTTGGTGATCATGTGACCAACCTGACCCGCATGAGCACCCCCAGCAACGGGCTGGCTGAGTACCTGTTCGACAAGCACACGCTGGGGGGCAGCAGCTAAATGCAGCCTGTGGATCTGCCCAGGGCCTCCAGAGAGACTGACACTCCCCAGCCTCTTCCCCTGAGTTGCAGCGCTGTTTTGTGTAGTTTGTCATTGTGTGTGAGGGAATTGTTATGCATTAATACAGATTGGGTGAGGTGAAATTCAGTGATTCTAGTACTCAAACACCCAGATTGAAGATAACTGACACAGACTAACCAAGGTAACTGACCAACACTTGCATGCTGACCAGCCATGGTAACTAACTCTTATAAATGGAAAGCAAAAAAAGAGATGCATGCACTCACAAACTAATCAGTATAATCTGTAAATGAGGCACACTGACTCCCACTCACAAATGGAATGGAAGGAGACACAAACTGCAACACGGCACAAACATGCTGGACTCCTTAACAcgatctttctttttctcaatCTGGGGCTcttgtcagtctctctctctccctcacctgtTTTCCTGGCAGAGTCTGGAAGTATGTCTGTACCAAATGAATAAACTAATGCTTTGCAGCAGACTGGTGTGATGTCTCCTACTGATTCGTAGGATGTCTTCTGATGCAATGTTTATAAGGAGTTGGGGTGGTGGGAGATCATGCTAACTCATATTTTGCAGGGTGATATAACACAATGTCTATAATTAATGTGTGGTGTGACTTGGTTTATAATGTGGTGTGTAGTAGGAATGGTGTGATGTAAGAGTGGTATGTAGGTGGTGTGGTGCAATGCTTTAAAGATAAGTAGTGCaatagtttatatataatgGAGTACTGATGGATGTGGTGTGAACTATAATACATAATCAGAATATAAGTCAAGCTGTGCAGTTCTTACAGCACTGTAGAGTTCAAGGGGTATGAATCCTGCTCTACGATGTGTGCTTGCATTACCAGGCAGCAGCTTCTGCTGTATTATACTGGATTTAAGCTTTTTGTACTGAAGGTTGTTTGCCCAGTTGCTCATCCAAACGGAGGCTTCCTACTGATTAATAGCTAATTTCATGGTCGATTTAATAAATTTATCATGTTGGCCTAGTAGCTACTTCAActatgtataaaaaaacaattctgaatGTTTGGCTGTTTGGTGACAAACCTCTTATGTTCTCTATAATCTTCTCTGTGCAACATTGTGGGGGACAAAATCTCTGTGTGCAGCCGTGCTCCAATGTCTTGCGCAATGTCTCCAAATCAATCACTCACACACTGGGTTTGCTAAATGCATGCATCTACCACCGGAGCCCAACCTTGAATTAAGTAAAATGTAGCTGAAAGTCAGTGATATGGATCGCTGTGTGTTGTCTAGACAAGCTTGAAACCGCAAAATACAGATTTTGGATTGTTCTTGACCCAAAATAACTGAAGACGTCAACATTTATTCTTTGCACGtttcttttttgatttattgattagaattgcaaaatgtttgtgaaaataCTCATGCACTATAGAAACATGCACTTCTTCAACGCAAACAGTGGCTATGgatttgccttaaaaaaaaaaaaaaaaagttttgtaag

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65931 lncRNA upstream 85313 15513535 ~ 15514018 (+) True G52691
TU65882 lncRNA upstream 167730 15412001 ~ 15431601 (+) True G52651
TU65860 lncRNA upstream 315786 15282700 ~ 15283545 (+) True G52632
TU65856 lncRNA upstream 352140 15246898 ~ 15247191 (+) True G52628
TU65847 lncRNA upstream 362407 15236702 ~ 15236924 (+) True G52619
TU65970 lncRNA downstream 19532 15627840 ~ 15703015 (+) True G52717
TU66036 lncRNA downstream 155629 15763937 ~ 15764143 (+) True G52766
TU66055 lncRNA downstream 228677 15836985 ~ 15837809 (+) True G52781
TU66090 lncRNA downstream 271749 15880057 ~ 15895419 (+) True G52798
TU66093 lncRNA downstream 287122 15895430 ~ 15898067 (+) False AMCG00008965
AMCG00008949 mRNA upstream 77035 15519629 ~ 15522296 (+) True AMCG00008949
AMCG00008948 mRNA upstream 80152 15518181 ~ 15519179 (+) True AMCG00008948
AMCG00008946 mRNA upstream 86194 15507310 ~ 15513137 (+) True AMCG00008946
AMCG00008947 mRNA upstream 105203 15493728 ~ 15494128 (+) True AMCG00008947
AMCG00008941 mRNA upstream 396378 15182788 ~ 15202953 (+) True AMCG00008941
AMCG00008953 mRNA downstream 14510 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008952 mRNA downstream 25415 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008954 mRNA downstream 33383 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008960 mRNA downstream 251256 15859564 ~ 15863670 (+) False AMCG00008960
AMCG00008965 mRNA downstream 288399 15896707 ~ 15910151 (+) True AMCG00008965
TU65619 other upstream 790045 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 804359 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 804359 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1058373 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 1116076 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 247916 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 753794 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 971555 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 1064195 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1722584 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile