RNA id: AMCG00008956


Basic Information

Item Value
RNA id AMCG00008956
length 1443
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00008956
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15542462 ~ 15596322 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCCCAGCCCTCCTGACACTGACGTCACTGACATTTGAACGTCCCAGCAAGCGGGAGACTCcagagacagcagcagcagaatccCCATGCAAAAgtgaTCACCTCAAGGAGATGCTGCTGCATCAGGACTGCATTGGCCAATTTGATCTGGCCACTCATGGGATGGGGTCATGGCAAAGGTGCGGAGACTGTGCCAATATTGGGAAGCATTTCGGGAGGGTCATAGCCCGGGATTACAGGGTGAGGCAGGATGAAAGACCTCTGCCCCTggtgctgggctgggctgggtggACGAGGATGATGACAAGGAGCCATAGACAGAGAGCGGGGAATAGAGCATTGGTCACACAGTCGTCTTGGGAGAAGAGTACCAGCAGCTGCAGGACATTGGAGAGGCAGGTGGAGGGCCCATGTTGGAAGAAAGAGGAGCAGAGtgcaggtggaggaggaggaggagagatggAGCTGGATGAACAGTCGGAGATGGGTCAAAGCGAGAAAGTTGAGAaggacaggATGTTTggtaaaaacatgaaacatgacACCTTTGTTAGCACTGGTCTAACAAATTGGAAAAAAGCTCTGGATCTCTTGAAAGAGCACAAGAAAACACCTGCCCATAAAGCAAGTATGCTTTCCTGGCACAGCTTTAAAGCCAGTGCTGCTCATGGCAGTGTAATTGAACAATTGCACTCAGCAAATGAGGCAGACTGGAGTACCTCACCCGTATTtgttttacttGTAAACCATCACAAAACCAGAGATGTTCAAAATCAGCTGGGGTTACAGCCATCCGAACTTGTGCAGCTTTCAAAGACCCACTGGTCAAGCCAGTTTCGGTCTGTAAATGCCATCTTAGAGAATCTCCCTGCAGTTCTTCAGTGTCTCTCCAGCATCAACAACTCCATGGCAGTAGGACTCCATGCCAAACTTAGCAGATTCTCCACAGTATACCTATTGATAATGTTGAAGACTTTTCTGTCTGTAACCGAGAACCTGCACAAATATCTGCAAAGTGAAACAGTAGACCTTGCTAAAGCTGCTGAGTACAAAGGAGCTGTGTGTGACACTCTAAAACAGATGTGCACAGATGAGAAGGCTACTATGCTGTATGATACTGTCAGGACCATTTGTGCAGCAAATCAGATCCCAGAGCCATGTGCTGCTACTAAACAAAGGCAGAATCAGAAATGCGTGGAGGTTTATGTAGTGGACTCTAGTTGTGGAGCAGTGAGTGACCTCAGTGATGCAGAGAATCTGAAAAGAAACCTTTTACTACCTTGCCTTGACAGAATGGTTGCTGAGATGGATCAACCGAAACCCATCTGGACCAATGAGAGCAGGGCACACTGCGGACAGTCTGCACACGGGTTCTATATAGCGCCTCTCACAGCCAATGGTTCTATAAATATGGGCAAAGCACCCTTCGGTGCCATATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65933 lncRNA downstream 29239 15507248 ~ 15513223 (-) True G52692
TU65916 lncRNA downstream 64525 15415945 ~ 15477937 (-) True G52676
TU65923 lncRNA downstream 113811 15426916 ~ 15428651 (-) True G52683
TU65897 lncRNA downstream 258194 15280896 ~ 15284268 (-) True G52666
TU65849 lncRNA downstream 303347 15238055 ~ 15239115 (-) True G52621
TU66004 lncRNA upstream 7503 15603825 ~ 15623991 (-) False AMCG00008957
TU66005 lncRNA upstream 7503 15603825 ~ 15610700 (-) True AMCG00008957
TU66009 lncRNA upstream 7503 15603825 ~ 15623991 (-) False AMCG00008957
TU66047 lncRNA upstream 224864 15821186 ~ 15822218 (-) True G52774
TU66080 lncRNA upstream 263201 15859523 ~ 15863705 (-) True G52793
AMCG00008950 mRNA downstream 13701 15514634 ~ 15528761 (-) True AMCG00008950
AMCG00008951 mRNA downstream 56592 15469674 ~ 15485870 (-) True AMCG00008951
AMCG00008945 mRNA downstream 142341 15399579 ~ 15400121 (-) True AMCG00008945
AMCG00008944 mRNA downstream 151412 15372545 ~ 15391050 (-) True AMCG00008944
AMCG00008943 mRNA downstream 214317 15301842 ~ 15328145 (-) True AMCG00008943
AMCG00008957 mRNA upstream 10621 15606943 ~ 15639130 (-) False AMCG00008957
AMCG00008958 mRNA upstream 53222 15649544 ~ 15660496 (-) True AMCG00008958
AMCG00008959 mRNA upstream 71494 15667816 ~ 15685050 (-) True AMCG00008959
AMCG00008963 mRNA upstream 192223 15788545 ~ 15801373 (-) True AMCG00008963
AMCG00008962 mRNA upstream 231378 15827700 ~ 15830629 (-) True AMCG00008962
TU65929 other downstream 36945 15485382 ~ 15505517 (-) False AMCG00008951
TU65310 other downstream 1558569 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1593371 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1855725 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 2217235 13320274 ~ 13325227 (-) False AMCG00008860
TU66056 other upstream 240667 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 245342 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 245342 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 361345 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 467903 16064225 ~ 16073935 (-) True AMCG00008971

Expression Profile