RNA id: TU66009


Basic Information

Item Value
RNA id TU66009
length 1328
lncRNA type sense_over
GC content 0.48
exon number 5
gene id AMCG00008957
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15603825 ~ 15639130 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccagactgatgtAGATCAcgtcatttagcaagaggcaaatggaggggcatcgtattcattaagagcatgtgatgtcccagtttatgtgtAGGTaagaaactcacacacacatacatacatgcacattatatatatgcacagtcacctacaaaattactggcgccattgataaagatgcgaataaaggctgtatgaaataaacacatgtaatatgtagaaagcgattgtccacaacttttattaaaagcatgctttgtttataattaaattccatgtAGCTGCTCCGCTCAGTCTGGGTCAGTCAGTGCTGAAGTCAGATGTGTTGCACAGTGACtagaccagcccaccctgatcactgattgggttaggaagaaccgtcactcaaaacctgctggaccaatggagacccaggatccacgcgTCCTTGTAAATCCCGCCACAGAATTTCACCCACCCAATCTGTATGAATGCATTACAATTCCCTCACACACAATTATAAACTACACAAGAACAGGGCTGCAACTCAGGGGAAGAGGCTGGGGAGTGTCAGTCTCTCTGGAAGCCCTAGGTGGACCCCCAGGCTGGGTTTAGCTGCTGCCCCCCAGTGTGTCCTTGTCAAACAGGTACTCAGCCAGCCCATTGCTGGGGGCACCCATGCGGCTCAGGTTGGTCACATGATCACCAAGCTTCTTGATGGCCTCCACCTGCTCGTTCAGGTAATGGGTCTCCAGGAAGTCACACAATGAGGGTCGGTCTTCTCAGAGGCTAACTTGTGCAGGTCAAGCAGGGCCTGGTTGACTTTCTTCTCCAGCTGCAGGGCAATCTGCATGGCCTCCAGCCCACTGCCCCACTCGTCCCGCTCAGGCCTTGACGTCCTGCAGCACCACTCGCCCCCCCCTCTTGTTCTGGAAGGACAGCAGCTTCTCAGCAtgctccctctcctcctcactGTTCTCCTTGAAGAAGTGCGAGAACCCATGCAGGGCCACATCATCCCTGGCGAAATAGTCCATGGACATGTAGGTGTATGAAGCGTAGAGCTCCATGTTCGCCATGCGATTGATGGCGGCCTCGCAGTCTCGGTGGTAGTTCTGGCGGATCTGAGACTCCATTTCGAGCGacagtttttagttttggtcGGAGGGAACGGAATAAAGcttcaacaaaaaaatatacagatcaatacaaaaataaaacctttactTTAATTATACGATAGTAAAGataaaattagtttaaattaagGAATGAGGTCGAAAGACGAAAGGCTCCGTTCAATCACTGTTGAAGCAAGAACTCCTGTCGGTTTCTTCCGAGGAATTGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65933 lncRNA downstream 90602 15507248 ~ 15513223 (-) True G52692
TU65916 lncRNA downstream 125888 15415945 ~ 15477937 (-) True G52676
TU65923 lncRNA downstream 175174 15426916 ~ 15428651 (-) True G52683
TU65897 lncRNA downstream 319557 15280896 ~ 15284268 (-) True G52666
TU65849 lncRNA downstream 364710 15238055 ~ 15239115 (-) True G52621
TU66047 lncRNA upstream 197195 15821186 ~ 15822218 (-) True G52774
TU66080 lncRNA upstream 235532 15859523 ~ 15863705 (-) True G52793
TU66084 lncRNA upstream 235532 15859523 ~ 15863705 (-) False G52793
TU66085 lncRNA upstream 241757 15865748 ~ 15865986 (-) True G52794
TU66108 lncRNA upstream 281882 15905873 ~ 15908407 (-) True G52808
AMCG00008956 mRNA downstream 7503 15542462 ~ 15596322 (-) True AMCG00008956
AMCG00008950 mRNA downstream 75064 15514634 ~ 15528761 (-) True AMCG00008950
AMCG00008951 mRNA downstream 117955 15469674 ~ 15485870 (-) True AMCG00008951
AMCG00008945 mRNA downstream 203704 15399579 ~ 15400121 (-) True AMCG00008945
AMCG00008944 mRNA downstream 212775 15372545 ~ 15391050 (-) True AMCG00008944
AMCG00008958 mRNA upstream 25553 15649544 ~ 15660496 (-) True AMCG00008958
AMCG00008959 mRNA upstream 43825 15667816 ~ 15685050 (-) True AMCG00008959
AMCG00008963 mRNA upstream 164554 15788545 ~ 15801373 (-) True AMCG00008963
AMCG00008962 mRNA upstream 203709 15827700 ~ 15830629 (-) True AMCG00008962
AMCG00008964 mRNA upstream 210049 15834040 ~ 15851810 (-) False AMCG00008964
TU65929 other downstream 98308 15485382 ~ 15505517 (-) False AMCG00008951
TU65310 other downstream 1619932 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1654734 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1917088 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 2278598 13320274 ~ 13325227 (-) False AMCG00008860
TU66056 other upstream 212998 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 217673 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 217673 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 333676 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 440234 16064225 ~ 16073935 (-) True AMCG00008971

Expression Profile