RNA id: AMCG00008959


Basic Information

Item Value
RNA id AMCG00008959
length 717
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00008959
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15667816 ~ 15685050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTAGGAGGGCGCTGGACCAGAGTGAGCAGCGCTGGGGCTGGATGAGAGTGAGCAGGGCTGGGGCTCCTGGAGAAACAGCAGGAGGCAGACCAGTCTGGATCTTTCTTCCACACAGAATGGAGGGATTCTGGCCCatggagcaggaggaagatagaaagagggagagggagggagggagggagagtggtGGGGAAGGCAAAGAATGGGACAGggagaaaaggagaagaaagatggagagaggaagacagagggaggaagagagtGCAGCTCGAGAAATGGGCAGTAAGACTCCTGTCCACGAACACCTCCCCTCTCGACTCATCACACCCCAACCAGgtctgtGTATAAAGACAGTCTCCTCACAGGGCACCAAAGTCTTTGTGAACATCTGTCAATCACCCCAGatcccaccccctccacccctcaCAGAGGCGGGCCTAaaGGACACCCTGTTCCTGCAGTTCCTGATCGCTGTGTTGTTCGAGGGTCTGGAGAACAAGTACAGCCTTGATCTCAGTAGAGagtgGAGGGTGCTGAAGAACAGGAAGTGTCTGGGGTCCATTGGGCAGCAGAGTGTTCGCACCAGTAGCCGACCCTGTATCCAGGAGATAGAACCTGGGGGAGGACAGGCTGTTGCTGTGCGCTCGCCCTTCTCGCTTTCACCTGGATTGTTTCTTTCCCTTGCTCATCGACCCAGCGTCCAGCGCAGCCCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66004 lncRNA downstream 43825 15603825 ~ 15623991 (-) False AMCG00008957
TU66009 lncRNA downstream 43825 15603825 ~ 15623991 (-) False AMCG00008957
TU66005 lncRNA downstream 57116 15603825 ~ 15610700 (-) True AMCG00008957
TU65933 lncRNA downstream 154593 15507248 ~ 15513223 (-) True G52692
TU65923 lncRNA downstream 239165 15426916 ~ 15428651 (-) True G52683
TU66047 lncRNA upstream 136136 15821186 ~ 15822218 (-) True G52774
TU66080 lncRNA upstream 174473 15859523 ~ 15863705 (-) True G52793
TU66084 lncRNA upstream 174473 15859523 ~ 15863705 (-) False G52793
TU66085 lncRNA upstream 180698 15865748 ~ 15865986 (-) True G52794
TU66108 lncRNA upstream 220823 15905873 ~ 15908407 (-) True G52808
AMCG00008958 mRNA downstream 7320 15649544 ~ 15660496 (-) True AMCG00008958
AMCG00008957 mRNA downstream 28686 15606943 ~ 15639130 (-) False AMCG00008957
AMCG00008956 mRNA downstream 71494 15542462 ~ 15596322 (-) True AMCG00008956
AMCG00008950 mRNA downstream 139055 15514634 ~ 15528761 (-) True AMCG00008950
AMCG00008951 mRNA downstream 181946 15469674 ~ 15485870 (-) True AMCG00008951
AMCG00008963 mRNA upstream 103495 15788545 ~ 15801373 (-) True AMCG00008963
AMCG00008962 mRNA upstream 142650 15827700 ~ 15830629 (-) True AMCG00008962
AMCG00008964 mRNA upstream 148990 15834040 ~ 15851810 (-) False AMCG00008964
AMCG00008961 mRNA upstream 168164 15853214 ~ 15857199 (-) True AMCG00008961
AMCG00008968 mRNA upstream 210638 15895688 ~ 15898166 (-) True AMCG00008968
TU65929 other downstream 162299 15485382 ~ 15505517 (-) False AMCG00008951
TU65310 other downstream 1683923 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1718725 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1981079 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 2342589 13320274 ~ 13325227 (-) False AMCG00008860
TU66056 other upstream 151939 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 156614 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 156614 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 272617 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 379175 16064225 ~ 16073935 (-) True AMCG00008971

Expression Profile