RNA id: TU66074


Basic Information

Item Value
RNA id TU66074
length 2001
RNA type TUCP
GC content 0.44
exon number 7
gene id AMCG00008960
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15856224 ~ 15863670 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atattacattgtattgcATTAAAATATGATGTACTATAGTGcacactgtattgtattatattactgCTATTACCACTACTATCAATCATAATAACTACAACATCTCTTAATCTTTGTACAAAACCTGTCATTTCCTTCTTCCTGTACCACtgtctgtcttttctgtttgtcCCTCCCATCCGCTGCGGACTCGTTTGTGCGAGTGTGTGGCGCACAGCCACTTCCTTCCATTCCTATTAGTAGTATAATAGTAGCCtatagtagaagtagtagtagtaatacagTAGCAACAGAATCATTTCCACATATCTCACAAACGCTACACACACGAGCGATCAAATAATAACCGTGCATACGAATATGTATAGTCCGTGGCAATATCGATTGGAGTGTTATGGTTATGACTGTTAAATTGAAATACCATAGTACCCTCAAAATGtagcataatacaaataacaatatagTGAACTCAATTATTGTCAAGGGGAATCGTGTTCGTTGTAACAATGTGCGACACCAAAGTTTAAAGTCATGATAGACACACATCCACAACTCATACAAAGTTACCGATAAAGTAAGAGAATACAGTTCTGAAGCAGAAAACTGgtttaaaacaatacagaaagacgacgacgacgacgacgacgacgacgacagcagcagcagcagcagcagcagcatattattattattattattattataaccccATTGTGTGAAGACTGCAGGCTATGTATAGACATGTTTGGGAGCCGTTCGCAACTTGAAACCGATACATAGTTCGACCGAGTCTTAAGACGTCTTTGTACTTTAGCCTTTTTAACCACTCTCGATAATGCACCTATCGCACCCCGCCTTTCTATGTTTCTCCGATTCTCTGTCTACTTCTCTCTGTTCCCGGTCTCCCTACCCCAGTCCGGGCGGCTCCAGTCGTACAGTACTTACCCGGCTCGCCTCCCCCATTCGGCGCCGCCATCTTTGAACTGACTGGATGAGCGCTTCCGCCTCATGTCATGTGGCCGGGATTTGGGCCCTGTGCGCCGGATGAAGGGCCTCTTTTTCTACACGACTGTGCAAGATGGCGGACACGCAGACTGAGAGGGCATACCAGAAGCAGCCCACCATCTTCCAGAACAAGAAGCGCACTCTGCTTGGGGATGGAGCTAAGGAGAAGCTGCCCAGATACTACAGGAGTGTGGGGCTGGGCTTCAAGACTCCTAGAGAGgCCATAGAGGGCAGTTACATTGACAAGAAGTGCCCCTTCACCGGCAATGTATCTATCCGTGGACGCATCCTGTCTGGAGTGGTGACGAAGATGAAGATGCAGAGGACCATAGTGATCCGCAGGGATTATCTGCACTACATCCGCAAATACAACCGCTTTGAGAAGAGGCACAAGAACATGTCTGTGCACCTGTCCCCAGCCTTCAGGGACGTGCAGGTGGGTGACATTGTCACCGTGGGAGAATGTCGGCCCCTCAGTAAGACCGTGCGCTTCAATGTGCTTAAGGTCACCAAGGCAGCTGGGGCTAAGAAACAGTTCCAGAAGTTCTAGAGGACAGAAGGACACCTCCATAgagatcaataaaaacaattgctCTTTAAATGGCATCTCTGTGTCTGACTTTGGGGAAAccagtgtgtgtgtgtgtgcgcacctGTCAATGATCAATTAAAATAGTTATGCATACTCAAACCCTACCCTTGTTTTGGTTGAGCTGCATTTCACCTGGTGCTAACTTGTGTTGATATCATAATGTTTGATTATCACTTTTTTCCTCAAGGGAGGTTTCCTGTCTAGTTGGGGATCTAACTTGTTTAAATGGCATTTCTGTAATATGGCAAATCATTGTATcaacattaataaatgcattgccggacaaaaacaaatataaggTATAATGTATGGAATAAAGAAACCTAACTTTAATCTTGAGAGTGGGTTTCTTATGTATTACTATATACAGGTACTATATTTGCAAGAGTGATGCGGGACAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66055 lncRNA upstream 18415 15836985 ~ 15837809 (+) True G52781
TU66036 lncRNA upstream 92081 15763937 ~ 15764143 (+) True G52766
TU65970 lncRNA upstream 153209 15627840 ~ 15703015 (+) True G52717
TU65931 lncRNA upstream 342206 15513535 ~ 15514018 (+) True G52691
TU65882 lncRNA upstream 424623 15412001 ~ 15431601 (+) True G52651
TU66090 lncRNA downstream 16403 15880057 ~ 15895419 (+) True G52798
TU66093 lncRNA downstream 31776 15895430 ~ 15898067 (+) False AMCG00008965
TU66120 lncRNA downstream 89394 15953048 ~ 15955372 (+) True G52817
TU66175 lncRNA downstream 198186 16061840 ~ 16063714 (+) True G52856
TU66180 lncRNA downstream 221874 16085528 ~ 16085843 (+) True G52861
AMCG00008954 mRNA upstream 205951 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008952 mRNA upstream 215289 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008953 mRNA upstream 232821 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008955 mRNA upstream 247916 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008949 mRNA upstream 333928 15519629 ~ 15522296 (+) True AMCG00008949
AMCG00008965 mRNA downstream 33053 15896707 ~ 15910151 (+) True AMCG00008965
AMCG00008967 mRNA downstream 67662 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008966 mRNA downstream 79503 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008970 mRNA downstream 128459 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008969 mRNA downstream 188895 16052549 ~ 16054525 (+) True AMCG00008969
TU65619 other upstream 1046938 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1061252 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1061252 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1315266 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 1372969 14481921 ~ 14483255 (+) True G52349
TU66272 other downstream 498448 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 716209 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 808849 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1467238 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1865712 17729366 ~ 17730660 (+) True G53298

Expression Profile