RNA id: AMCG00008962


Basic Information

Item Value
RNA id AMCG00008962
length 867
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00008962
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15827700 ~ 15830629 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCCTCGCTGGTTCTGAACCCCTCCTTTCTCTGTGTAAATCCCCGCCCCTTTCGCCGCAGTGTGCTTCTTGCTGTTTCAGTGACGTCATAGCTGTCAAAATGGCGGCGATGTCGGAATCTTTGGGGCTGGAAAGAGATGTGTGTCGAGTGATCGAGCTGCTGGACAGGCTCCAGCGCAGTGGGGAGCTGCCACCCCCGAAGCTGCAGGCACTGCAGAGAGTCCTGCAGAGCAAGTTCTGTGCCGCCATCCGAGAGACTGAGGAGGGGCTGGGCTTCAACATCATGGGTGGCAAGGAGCAGAACTCACCCATCTACATCTCCCGCGTCATCCCAGGGGGTGTTGCCGACCGGCAGGGGGGGCTGAAGAGGGGCGGCGCAGGGCTGTGTGCGAGTGGTTGTGCGTTATACCCCCCGCGTGCTAGAGGAGATGGAGGCACGCTTCGAGAAGATGAGGAGTGCCCGTCGCCGCCAGCAGCACACCAGTTACTCgTCCCTGGAGTCTCGAGGTTAGCCAATCGCATCCATGCTCTCCTGTgctgatttccccccccccctcagagAATTctgatattaatacattttcattccagaaTACAGTGTTATTCCACAGTTAACAGAAGGAGAATTAATTACAGTTATAGACATGGAAACCTAATAAGTTTGTATGTAGTGGCATCCAGTCAGTGTGTAAGGATAGTTACCTATTATCATTATGgagatgttttaatgtttgtttgggTCGTGTCAGTAGCTGAGAGAGaacaatgttaataataatgtgaaatctattcatgtttttgtttgtttgtttgtttatttatttatttatatttatttatttattaaagtgaaAATACAATGGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66047 lncRNA downstream 5482 15821186 ~ 15822218 (-) True G52774
TU66004 lncRNA downstream 203709 15603825 ~ 15623991 (-) False AMCG00008957
TU66009 lncRNA downstream 203709 15603825 ~ 15623991 (-) False AMCG00008957
TU66005 lncRNA downstream 217000 15603825 ~ 15610700 (-) True AMCG00008957
TU65933 lncRNA downstream 314477 15507248 ~ 15513223 (-) True G52692
TU66080 lncRNA upstream 28894 15859523 ~ 15863705 (-) True G52793
TU66084 lncRNA upstream 28894 15859523 ~ 15863705 (-) False G52793
TU66085 lncRNA upstream 35119 15865748 ~ 15865986 (-) True G52794
TU66108 lncRNA upstream 75244 15905873 ~ 15908407 (-) True G52808
TU66109 lncRNA upstream 78035 15908664 ~ 15910151 (-) True G52809
AMCG00008963 mRNA downstream 26327 15788545 ~ 15801373 (-) True AMCG00008963
AMCG00008959 mRNA downstream 142650 15667816 ~ 15685050 (-) True AMCG00008959
AMCG00008958 mRNA downstream 167204 15649544 ~ 15660496 (-) True AMCG00008958
AMCG00008957 mRNA downstream 188570 15606943 ~ 15639130 (-) False AMCG00008957
AMCG00008956 mRNA downstream 231378 15542462 ~ 15596322 (-) True AMCG00008956
AMCG00008964 mRNA upstream 3411 15834040 ~ 15851810 (-) False AMCG00008964
AMCG00008961 mRNA upstream 22585 15853214 ~ 15857199 (-) True AMCG00008961
AMCG00008968 mRNA upstream 65059 15895688 ~ 15898166 (-) True AMCG00008968
AMCG00008971 mRNA upstream 232925 16063554 ~ 16064840 (-) False AMCG00008971
AMCG00008973 mRNA upstream 385909 16216538 ~ 16233132 (-) True AMCG00008973
TU65929 other downstream 322183 15485382 ~ 15505517 (-) False AMCG00008951
TU65310 other downstream 1843807 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1878609 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 2140963 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 2502473 13320274 ~ 13325227 (-) False AMCG00008860
TU66056 other upstream 6360 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 11035 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 11035 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 127038 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 233596 16064225 ~ 16073935 (-) True AMCG00008971

Expression Profile