RNA id: AMCG00008965


Basic Information

Item Value
RNA id AMCG00008965
length 2505
RNA type mRNA
GC content 0.53
exon number 18
gene id AMCG00008965
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15895430 ~ 15910151 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAACTTCTTCCTGGCCAGAATCAGGGCCATCTCACACCCTGAGACCTGGCTGTACCTCTCCGCCGCAGAGACTAGGGCCCCCCAGCTGTCTTTGTGGTTGTCAGGGATATCCGGCTCGTCCCTGGTCAAGGTCGCCATGACAATGGAGGAGCTTGTAGTGCCTAGTCAGGGGTCCGTTTCAAGGGGCGGGGAGTTGGGGGCGGTGCTTTCTCTGACCGAGACGGAAGTGTCGTCTTGTTGTTTTGGAGCCATGGAGGCGAACGGCGAGAGTCACAAGGTATTGTTTGAGAAAGAGGGGGTGTTCCTACACACCAACGCCAAGAGGAACAACCAGGAGTCGACCATCCCTGGGACCATCCGCATCACTGAGAGAGGGGGGGAGCCGGCACTGGAGTGGAGCcccctggaggaggagaggggaacTGCACCCCAGGATGGGGAGAGTGAAGAGGAGACAAACTTTGACCCCGGCTACGAGCCTGATTGGGCAGTGATCAGCACAGTGAAAACATGCCcccctgacagagagagaggaactgAGAAAGGTGGCTggtcctccttctctctccctctctctgagcTCTCCTCCCTGCGACGCTCTCGATTCTCTTTGGGTCGCAACTTCCTGGTGTTGACCAGCCAGGTAGATTCTCGTTTGTTCCTGGTTTATCCCCATGACTCTGGTGCCCTCTCCCAGTCGTTTGATGAACTGCAGTTGTTCGACGATGGAACATCTGACTTGGTGTctAGATTTATACAGGACCCCTATGCCACCACCTTTGGGGGCTTCTCCAAGGTCACCAACTTCTTCCGGGGTGCCCTGCGACCCCCCCATTCCCCAGCCAATCACTGCTCGAGGGGTGGGGCTGGAGTTGATGGGGGAGGTGCCGTGGGTGGGGCCGAGGATGAGCCTGGCTTTGAGCTTATTacttgtGGGGTAGAGCTTATCCCCCGGCCTGAGGTGAAGAGGGCAGAGCCTCTGAACAAATGGGAGGAATATTTTGACGAAGAGGGTCAGCTCCAGAACCCCCAGCAAATCAAGGAGTTCATATTCAGAGGGggtatTGCTCCCTCGCTCCGGAAGGATGTGTGGAAGTTCTTagatgAGTATTTCAGGATGAAGGTGCAGTGGAAGTCAGTTAGTGAAGAGCAGGAGATGAGGAACTCTCTCCTGCGAGGATACCGAAGCCTGATTGAGCGTGACGTGAACAGGACGGACCGGAATAATCGATTCTTTGCAGGCAGTGACAGCCCCGGCCTGGGCTATGTCCAGGGTATGAGTGACCTGCTCTCTCCCATCCTCTTTGTCACTCAGAACGAGGTGGAGTCCTTCTGGTGCCTCACAGGCTTCATGCAGCTGGTGcaccaGAACTTCGAGGAGTCTCAGGAGGCCATGAagcagcagctgctgcagctcaACATCCTTCTGAGGACTCTGGACCCCGAGCTacTCTCAGGACTCTGGCTCTCTGTGCTTCACTTTCCGGTGATGTGGACTGGTCTGCCCTGTTCTAACTTTCACTTGCTGGTGGCCTGTGGCATTCTGACATCCCAGAGGGTGGCTCTGATGGGATCAGACTACGACTTTAACATGATACTGAAGcacATCAATGATCTGTCAATGCAGTTGGATGTGTCCTATGTACTCTGCTGTGCTGAGGGCATCTACACCCAGCTGAGCTCCTCTCCTgatGTGTCTGCCAAAGTCCGGGAGGTTTTGGGTCTCTGTCCCCTCCCTGTCCAGTCAGGCATCTCAGAGCGTAGTTCCAGCAGCCCTCTCATCCAATCAGaatccaccaccaccacctccagcCAATTAGGGGCCGTGACCGAGGTCCAGCACCCGCCCCCTACCTACCCTTAACCCTTTGATTTGTGACCTGCAGTGCATGTGTGTTGCTGGGGTCTAGCTGTGAATGTCTCtcaatgtattgattaataAAGGGTGTGTCATAactatataattatttacactACACTCACTACACTGCGAGACAGTCATGGTTTGATTATATCAGTTCTGTTCAGGGCAGTGGCTTCAGATAACATTGTCActatgtctctctgtgtgtctatctgtggctctctgtgtgtttctctgtgtctgtctgtgtctctccctaTCTCTGTTTCTCTaagtctctctgtctgtctctctttttaaatatatcatgaTTTGTAGAGTTGATTTGAGGTCAAAAGTCAACATGATGGTCTATCCAGTTTGGAGACCTCCAcctacaataacacacacaaagacacatacTCTTACCATATATAAGCACACATATAATCCTCTATAATCAATTTTCCTGTCTTCCAATGGCAGTAATTGTGTCCGCTGGAGCAGGGTTGCAACAGGAATGTCAGGGGCGTTTCCTGCGCTGTTGTCTAAGAACCTGTGTTAATCTCTGTGAGACCAGCACGGTGGGCTTGCTGTGACGTTTTTCTGTAGCGTCACTGTGTTGTTTGTCTTGGCCGAATAAAAGACCATTGAATCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66090 lncRNA upstream 1288 15880057 ~ 15895419 (+) True G52798
TU66055 lncRNA upstream 58898 15836985 ~ 15837809 (+) True G52781
TU66036 lncRNA upstream 132564 15763937 ~ 15764143 (+) True G52766
TU65970 lncRNA upstream 193692 15627840 ~ 15703015 (+) True G52717
TU65931 lncRNA upstream 382689 15513535 ~ 15514018 (+) True G52691
TU66120 lncRNA downstream 42897 15953048 ~ 15955372 (+) True G52817
TU66175 lncRNA downstream 151689 16061840 ~ 16063714 (+) True G52856
TU66180 lncRNA downstream 175377 16085528 ~ 16085843 (+) True G52861
TU66185 lncRNA downstream 188089 16098240 ~ 16098446 (+) True G52863
TU66199 lncRNA downstream 298797 16208948 ~ 16210044 (+) True G52877
AMCG00008960 mRNA upstream 33037 15859564 ~ 15863670 (+) False AMCG00008960
AMCG00008954 mRNA upstream 246434 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008952 mRNA upstream 255772 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008953 mRNA upstream 273304 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008955 mRNA upstream 288399 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008967 mRNA downstream 21165 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008966 mRNA downstream 33006 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008970 mRNA downstream 81962 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008969 mRNA downstream 142398 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008972 mRNA downstream 215990 16126141 ~ 16134060 (+) True AMCG00008972
TU66074 other upstream 33053 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1087421 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1101735 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1101735 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1355749 14527818 ~ 14540958 (+) False AMCG00008910
TU66272 other downstream 451951 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 669712 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 762352 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1420741 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1819215 17729366 ~ 17730660 (+) True G53298

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_02381459_02390386.mRNA True 2064 mRNA 0.50 17 CI01000069 2381315 ~ 2390386 (-)
rainbow trout (Oncorhynchus mykiss) TU1946903 False 813 TUCP 0.53 8 NC_048585.1 2639340 ~ 2653619 (+)