RNA id: TU66093



Basic Information


Item Value
RNA id TU66093
length 1204
lncRNA type sense_over
GC content 0.49
exon number 6
gene id AMCG00008965
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15895430 ~ 15910151 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gggggtgcTTCCTCACTGAGagatccATCAGTGCTCTCCTCCTCTCCGTCCGACTCTCCAAATGGCTCACAGTcccgagagagagagtcctcaTCCATAGAGAACAcacCTGCGGTCTCATTTAAATTCCCTCTTCGTCTCGCCATCTCAtcctcctcctgttcctcttcttcctcctcctcctcctcctccagctccacttcctcttcctcctcctcctcctcctcctctactctttcttctcctccctctggcctctccctcactccctcgtTCATCTCCAGAtcccccctctctttcccccccctccctttcaGCCCGCCAATGAGGAGGCCAGGGCTGTAGATTGACGGGTAGCTCTGTGAATAGAGGCGCGAGCCAGGGCCATCTCACACCCTGAGACCTGGCTGTACCTCTCCGCCGCAGAGACTAGGGCCCCCCAGCTGTCTTTGTGGTTGTCAGGGATATCCGGCTCGTCCCTGGTCAAGGTCGCCATGACAATGGAGGAGCTTGTAGTGCCTAGTCAGTGCTTAATTGGGGACAggatgattttgttgttttcttcttaattgGGGTGTGTATGGGGACAggatgattttgttgttttcgtCTTAATTGGGGTGTGTAAATAGTGTATTTGTCAGTGTATCAGATGTCTCATCTGattctctctgtcagtgtctcagtctctctctctctgtctatctccctctccctctctttggtCAAATGTTTTCCTGTCGTCTGTTAGGTCTCTCTCCTTCAATCCAtcacactttcattttcttttggtcCCTTGCTTTCCTGGCTACGTCTCTTTGGCTTGTATTCTAttgttccctctctctctgtcaatcAGTGtgaatgtactgtagtgtccagtcagtttATTATCCCTactcctctctcactctgtctcttaTTAATTACTTAGTCAGGAAAGGTGATTGGTCTGTGTGGGGAAAATGGGTCTAATTAGTGAATTGGTTGGTAAGAAAAGGGTGGGTGTTAGCAGGGGAGCCGTGAGACTGAGGCAGGTAGGACAGATGGACAAAACAGCATCTCTGTGGACATCaccTCTTCTCGTTCTGTCTTTGCTTCGTCTCGACTTTTCTTTCCTAAActtgcgttttttttttaagttctctttctctttttctaatTCTCTCTCCACGTTCCGTGTTTACAGTTACGACTCCTCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66090 lncRNA upstream 11 15880057 ~ 15895419 (+) True G52798
TU66055 lncRNA upstream 57621 15836985 ~ 15837809 (+) True G52781
TU66036 lncRNA upstream 131287 15763937 ~ 15764143 (+) True G52766
TU65970 lncRNA upstream 192415 15627840 ~ 15703015 (+) True G52717
TU65931 lncRNA upstream 381412 15513535 ~ 15514018 (+) True G52691
TU66120 lncRNA downstream 54981 15953048 ~ 15955372 (+) True G52817
TU66175 lncRNA downstream 163773 16061840 ~ 16063714 (+) True G52856
TU66180 lncRNA downstream 187461 16085528 ~ 16085843 (+) True G52861
TU66185 lncRNA downstream 200173 16098240 ~ 16098446 (+) True G52863
TU66199 lncRNA downstream 310881 16208948 ~ 16210044 (+) True G52877
AMCG00008960 mRNA upstream 31760 15859564 ~ 15863670 (+) False AMCG00008960
AMCG00008954 mRNA upstream 245157 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008952 mRNA upstream 254495 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008953 mRNA upstream 272027 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008955 mRNA upstream 287122 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008967 mRNA downstream 33249 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008966 mRNA downstream 45090 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008970 mRNA downstream 94046 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008969 mRNA downstream 154482 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008972 mRNA downstream 228074 16126141 ~ 16134060 (+) True AMCG00008972
TU66074 other upstream 31776 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1086144 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1100458 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1100458 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1354472 14527818 ~ 14540958 (+) False AMCG00008910
TU66272 other downstream 464035 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 681796 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 774436 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1432825 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1831299 17729366 ~ 17730660 (+) True G53298

Expression Profile