RNA id: AMCG00008966


Basic Information

Item Value
RNA id AMCG00008966
length 1687
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00008966
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15943157 ~ 15951025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGACCCACGTGTTAATTTGTATGatcaaaaaaaaataaaaaatctgccGCGAAtctgtagcgcagatttccgcagttctgcacagatctgaaGAATTCCACCTATCCCGTTgttggagcagcgcagatccgcaCAGAACTACGGAAAGCTGtgctacacgaacgcgaccaCAGATACGAACTCATCGCGGTCGCGCTTCGATGACGTCAGATGTTCTAGCAAgctgtgttttccattttaacattctTATACTGTCTGAACTCGTCCGAGTCATCGTGACCGACTGCCTGACTGGTGGACATTGATCGTGATAGcgacagtcagacagacacacacgccagtcagtgtgtcatgtAAGATAGaacagcacacagagagagagacagacgagTACCTTTAACGCAGCTTGTTCAGTATGGCAGGACTATTTCATTGGCTGATGTTGCTGTCCGTCTCGCTGGGGGCATGGTCAGTGCCAATTGACCGCAATGGGAAACCCCCAGAGGATCCGCCCCCTCAGGAGGGGAAGCAAGAAGAGACTCTGCGGCAGGAGGTGTCCAGGCTGCGCATGCTGCTGAAGGCCAAACTGGACAGCACTGACCAACACAgtgtgcAGATAGACCATGCCTCCCTGCTGAAGCAATTTGAGCACCTGGACCCTCAGAACCTGCACACCTTTGAGGCCAAAGACCTGGAGATGCTGATAGAGACAGCTACCAGAGACCTGGAGAGCTACGATGCCGCCCGGCACGAGGAGTTCAAGCGCTACGAGATGCTGAAGGAGCATGAGCGCAGGGAGTACCTAAAGGGACTGGACCAGGAGCGCCGGGAGACGGAGGAGCGCCGCCTGCAGGATCTGCAGGAGAAACACAAGATGCACCCGAAGCTCAACGCCCCTggcagtAAGGCTCAGCTCAGGGAGGTGTGGGAGGAGACGGATGGACTCGACCCCCAGGAATTCAACCCCAAAACCTTCTTCACTCTCCACGGTCTGCATCCCTCCTTTACCTTTCTCTATCCCCCCATCACTgtggactccaatcacgATCGGCTCGTCAGCTTGGAAGAGTTCCTGAAGTCGACAGAGAAGAAGGAATTCAACAGCCCTGGAGAGTGGGAgACTCTGGACGAGCGGCCCCTTTACTCAGAGGCAGAGCTCCAGCAGTTTGAGGTGGAGCTAGCGGCACAGGAGGCGGAGCTAGTAAAGAAGGCGCAGCAGTTGAAACAGGAACAGGaggaactgagagagagagagagagcacttcAGGAGCAGAAGAAGGAGTACCAGCAGGCAGTGATGCAGATGTCCCAGAGACAGAGGGCCCCCCAGCCAGTAGAGGGACAACCCCCCTCGGGTCCTAATGGGGAGCTGCAGTTCCACACCGAGATGAAGAAACTGGAGCAAGgtggcgactctcctctctctcaggatgGGGCAGCACCTCAGAGTCATCTCCTGGCTGAGCCCCCCCAGAACCAACCTCTGCACACCTCCTAACCCcctacccccccccacctctttctctatctccctccctctctctatctctctcgcACAGTGTAGTAGTATTGAGCcactctctctgcctccttctctcccttctCCAACTTccactctcccctctccccctctctctctgtattctCACTTATACTGTCggctcatttaaataaagtgtctGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66093 lncRNA upstream 45090 15895430 ~ 15898067 (+) False AMCG00008965
TU66090 lncRNA upstream 47738 15880057 ~ 15895419 (+) True G52798
TU66055 lncRNA upstream 105348 15836985 ~ 15837809 (+) True G52781
TU66036 lncRNA upstream 179014 15763937 ~ 15764143 (+) True G52766
TU65970 lncRNA upstream 240142 15627840 ~ 15703015 (+) True G52717
TU66120 lncRNA downstream 2023 15953048 ~ 15955372 (+) True G52817
TU66175 lncRNA downstream 110815 16061840 ~ 16063714 (+) True G52856
TU66180 lncRNA downstream 134503 16085528 ~ 16085843 (+) True G52861
TU66185 lncRNA downstream 147215 16098240 ~ 16098446 (+) True G52863
TU66199 lncRNA downstream 257923 16208948 ~ 16210044 (+) True G52877
AMCG00008967 mRNA upstream 11178 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008965 mRNA upstream 33006 15896707 ~ 15910151 (+) True AMCG00008965
AMCG00008960 mRNA upstream 79487 15859564 ~ 15863670 (+) False AMCG00008960
AMCG00008954 mRNA upstream 292884 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008952 mRNA upstream 302222 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008970 mRNA downstream 41088 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008969 mRNA downstream 101524 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008972 mRNA downstream 175116 16126141 ~ 16134060 (+) True AMCG00008972
AMCG00008978 mRNA downstream 479792 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008981 mRNA downstream 596592 16547617 ~ 16558958 (+) True AMCG00008981
TU66074 other upstream 79503 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1133871 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1148185 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1148185 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1402199 14527818 ~ 14540958 (+) False AMCG00008910
TU66272 other downstream 411077 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 628838 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 721478 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1379867 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1778341 17729366 ~ 17730660 (+) True G53298

Expression Profile