RNA id: AMCG00008972


Basic Information

Item Value
RNA id AMCG00008972
length 1626
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00008972
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16126141 ~ 16134060 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAAGCCACCTGAGGatggcggaggaggaggaggaggaggagagagggagtgtgagaACCCCAAGCACAGCAAGAATGAGAAGAATGCGGCAGAGAAGGGGGGGAATGAGGTGGAGATGGAAAAAGGGCGAGAGAACAGCAAGGAGGGcatggagggaggagggggagggggagggggagggggagagaagcaGAGGAAGGCAGAGAGCAGGAAGTCTGGGAGTCTCtggagaggtgggggggcaggggggtgggggatgaaTGACAGGCTGGCCATCAACGTCTCGGGCTTGCACTTTGAGACTCAGCTGCGCACCCTGGCGCAGTTCCCCGACACGTTGCTGGGCGACCCCAAGCGCAGGATGCGCTATTTCGACCCTCTCCGGAACGAGCTCTTCCTGGACCGGAACCGGCTGTGTTTCGACGCCATCCTATACTTCTACCAGTCAGGGGGACGGCTGCGGAGGCCAGCCAACATCCCACTGGACGTGTTCATGGATGAACTGGCCTTCTATGAGTTGGGTGCAGACACGCTGGCCAGGTTCCGGGAGGATGAGGGCTTCCCTAAAGAGGAAGTGAGGCCGCTGCCTGAGAACGAGACACAGCGGCAGCTATGGCTGCTCTTTGAGTACCCAGAATCCTCCTCTGCTGCTCGTATCATCGCTATCATCTCTGTCATGGTCATCTTGGTGTCCATCGTTATCTTCTGTCTAGAGACGCTGCCCGACTTCAAGAGCgagagggaggaggtgagagagagagaaatagagggagagaaagaggaagaaagGATTAGAGGGGTAGAggaggatggagagagggagggagagttgTCTTCAGTCTGGAGACACTGGCTGACTTCAAGAACTATCTGTATTTGCTGGTTCTCCTTCGAGTTGTTCATGCGATTTGCCAGCTGCCCTAGCAAGGCCACCTTCTTCAGGGATATCATGAACCTGATTGACTTCGTGGCCATCATCCCCTACTTCGTGACGCTGGGCACGGAGCTGGCCCGCTCCAAGGGCGGCACACCGGCAATGTCACTGGCCATCGTCAGGGTCATCCGTCTGGCTGACCACCGTGACACGGCCTTCACCAGCATCCCTGAGGCCTTCTGGTGGGCCGTGGTCACCATGACAACGGTGGGCTATGGTGACATGTCCCCTACCACGGTGGGTGGAAAGCTGGTGGGCTCTCTCTGTGCCATTGCTGGGGTGCTGACCATCTCGCTGCCTGTGCCAGTCATCGTGTCCAACTTCAGCTACTTCTACCACCGTGAGACTGAGTGCCAGGATCCCACAGAGTACACCCATGTCAGGACCGTGCtgtgggagggggagagggagggagaaggagaggtggaagaggaggaggtggaggtggagggggaggaggaaggaggcCAAGGGTACAGGCCTCTGGGAGTGGGTGAGGGCATCCTGGGGATTTGCGGGCCGCTAAATGCGGATTTCCTGGGGGGGCTAAACCCGGAGGCCAAACAGGACCCCAGCAGGCTGCAGCTATCTCTTTGGCACAGCAGGGCTCCAATGGAACTGCAGGTGCAGCTCCACGGTGGAATACCGGAGGGGAGGCAGCAAAGTGGCAGCAGCTTTCAAAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66185 lncRNA upstream 27695 16098240 ~ 16098446 (+) True G52863
TU66180 lncRNA upstream 40298 16085528 ~ 16085843 (+) True G52861
TU66175 lncRNA upstream 62427 16061840 ~ 16063714 (+) True G52856
TU66120 lncRNA upstream 170769 15953048 ~ 15955372 (+) True G52817
TU66093 lncRNA upstream 228074 15895430 ~ 15898067 (+) False AMCG00008965
TU66199 lncRNA downstream 74888 16208948 ~ 16210044 (+) True G52877
TU66212 lncRNA downstream 109477 16243537 ~ 16244943 (+) True G52890
TU66218 lncRNA downstream 177332 16311392 ~ 16319852 (+) True G52896
TU66261 lncRNA downstream 208956 16343016 ~ 16344076 (+) True G52931
TU66263 lncRNA downstream 210196 16344256 ~ 16344678 (+) True G52933
AMCG00008969 mRNA upstream 71616 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008970 mRNA upstream 133591 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008966 mRNA upstream 175116 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008967 mRNA upstream 194162 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008965 mRNA upstream 215990 15896707 ~ 15910151 (+) True AMCG00008965
AMCG00008978 mRNA downstream 296757 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008981 mRNA downstream 413557 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008979 mRNA downstream 426962 16561022 ~ 16564235 (+) True AMCG00008979
AMCG00008983 mRNA downstream 445803 16579863 ~ 16587381 (+) True AMCG00008983
AMCG00008982 mRNA downstream 465600 16599660 ~ 16602244 (+) True AMCG00008982
TU66074 other upstream 262487 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1316855 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1331169 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1331169 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1585183 14527818 ~ 14540958 (+) False AMCG00008910
TU66272 other downstream 228042 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 445803 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 538443 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1196832 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1595306 17729366 ~ 17730660 (+) True G53298

Expression Profile