RNA id: AMCG00008973


Basic Information

Item Value
RNA id AMCG00008973
length 2021
RNA type mRNA
GC content 0.55
exon number 13
gene id AMCG00008973
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16216538 ~ 16233132 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGTCGGAAGTCGCCGTCTGGAAGCAGTGGGTGTCGCCTGGAAAGAAAAACTGTTCGGGGGGGAACAAATCGTCGTGTTTTTCCTTCTTAGgtagggttgtgtgtgtgtgctttaacACTGCGGATATTGAACTCAGGGACCGAGGGACAGAGTTAGAGAGAGGAAAAGTAGtcatacatacaatacattctGCTTTTTGCAGGTGgcttgaaagagagagaggaacggTTAAACGATTGtcaaaacaataagaaaaacaatttaaacagttACAGAAAAGAgttagacagacagaaagaggaaAGCTTAAAATAGAAAGAGACTGAATTCCGTTATTTCGTCTCATTGTACGAATCTTCGACACTGCGCTACTGCTCAGACATATAAGCCAATAAATTAGACGGAATTAAACAgactaagagagagagagagagactgattaCACAGAGAAGGATAGCGATAGAGAGAGGAAAGGGAAAACTCGTTCATTAGCACATTGCTCGTCGATAAGTTCGTCTCGTTTCCGTGTGCGCGTGCACTTGAACTGCTTCATCTACACCAAAGCGCATTTGGGACCCAATGGCCGGCCTTACTAGCAAGACGGTGTTCGACATCTTCCAGTCTATGGAGTTCGGTCCGACCGGAGGAGACGGGACTGGAGTGGCGCAGGCCTGGTTACAGAGGCACAGCCACACTCTCGGCCTGTTTATTGGGGGGAAATTTGTGCACCCTGAAGGCAGAGAGATTGATAGCGTCACTGACTCTGCAGgtcagtcagtgtgcagtACTGTCAGGGCGGTGTTTGCTGATGTCTCTCTATCTGTGTCTGATGCCAGGGAGGGCTGTgaggtgtggggggggctgAGTTGCCATGCCCGAGCCAGACACCTGTACAGtgtggcTCGCAGCATACAGCGGTTTGGTCAGTCTCTGTCTGCAGTGGCCCAGCTGCAGTGCAGCCCGGCTGACCTCTCAGCGCTGACAAGGCTCCTGAGACTGCCCCCTAGCAACACAGTGGTGCTGCGGCCCTCCCCCCAGGCACGCCTCACCTCACTGCTATTGGCCGAGCTGTGCACTGGGGCCGGACTGCCGGCTGGTGTTCTGAATGTCATCACAGGTGATGACCTCTCTCTGGCGGTCGCGTTGGCTGAGCATTCCGAGGTCGACATGGTGACAGTTACTGGGAGGAGAGAggaaGGGTTGGTGTTGGCGGGAGCGGCGGCTGCAGGgggtgtccctgtgtctctgtctgtggggGGGCTTTGTCCCTTTATCATCTGTGACTCTGCTGACCTGGACAGTGCTCTTTGTCAGTGGCAGCTGCTGGTACAGGAGGCCGTGTGGGAGGCTGTGAGAGTTAGGCTACAGGAGAGGATTGCAACACTGCGCTGTCTCCCCCTGGTGGACACAGCAGTAAAGTGTGTTCTGGATGCTGCAATACAGGATGCTGTCCAGCTGGCCTCCTGTGCCCCCTGTGTCTGGGCCCCCCCCCCCGGGCCCCTCCTTCCTGCCCTCTCCTTCCGCTCCATGTCCGAGGGGCTGCAGTTGGCCAATAACAGTGCTCGCAACCTGGCTGCCTCACTGTGGACCGATGATGTCACTGTGGCCCTGGAGAGTGCCAAGAGTCTGAAGGTTGGCACAGTGTGGGTGAACTCTCACTCTCTGTTCGATGCTGCGGCCAGTTTTGGAGGAGTGAGGGAGTGTGGGAACACTACTGACGGAGGAAAAGAGggtctGTACCAggtggaCCGCTCCTATAAGCTGTATATCGGAGGTGTTCAGTGCCATCCGGAGGCTGGTTTCTATGGTGCCCGTGTGTCCGGAGGGGGCCCAGGGGGGCAGTACTGTCCAGTTGGGTCCAGGAAGGATGTCAGGAATGCTGTGGAGGCAGCAGACAAGGCCCAGCCTGGCAACCAGACTGGCCTCTCATTGGCTAAGGGTCAGGAGGAGGTGGATCTTTCTGTTGCTGCCGCCTTTGATTGGGCGTCACTCTGCGACAAGCTGGGAGGGACAATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66240 lncRNA downstream 1523 16208865 ~ 16215015 (-) True G52915
TU66195 lncRNA downstream 86187 16129281 ~ 16130351 (-) True G52873
TU66188 lncRNA downstream 90271 16124963 ~ 16126267 (-) True G52866
TU66144 lncRNA downstream 266207 15944798 ~ 15950331 (-) True G52831
TU66117 lncRNA downstream 276236 15940096 ~ 15940302 (-) True G52814
TU66243 lncRNA upstream 5626 16238758 ~ 16254139 (-) True G52918
TU66257 lncRNA upstream 78260 16311392 ~ 16313985 (-) True G52929
TU66268 lncRNA upstream 118880 16352012 ~ 16352300 (-) True G52938
TU66274 lncRNA upstream 129490 16362622 ~ 16362879 (-) True G52944
TU66334 lncRNA upstream 308136 16541268 ~ 16541555 (-) True G52999
AMCG00008971 mRNA downstream 151698 16063554 ~ 16064840 (-) False AMCG00008971
AMCG00008968 mRNA downstream 318372 15895688 ~ 15898166 (-) True AMCG00008968
AMCG00008961 mRNA downstream 359339 15853214 ~ 15857199 (-) True AMCG00008961
AMCG00008964 mRNA downstream 364728 15834040 ~ 15851810 (-) False AMCG00008964
AMCG00008962 mRNA downstream 385909 15827700 ~ 15830629 (-) True AMCG00008962
AMCG00008974 mRNA upstream 40672 16273804 ~ 16289372 (-) True AMCG00008974
AMCG00008977 mRNA upstream 60184 16293316 ~ 16298256 (-) True AMCG00008977
AMCG00008976 mRNA upstream 86236 16319368 ~ 16322631 (-) True AMCG00008976
AMCG00008975 mRNA upstream 103283 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008980 mRNA upstream 245656 16478788 ~ 16519566 (-) True AMCG00008980
TU66179 other downstream 142603 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 252921 15957667 ~ 15963617 (-) True G52834
TU66061 other downstream 364729 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other downstream 364729 15841664 ~ 15851809 (-) True AMCG00008964
TU66056 other downstream 378737 15836989 ~ 15837801 (-) True G52782
TU66281 other upstream 171578 16404710 ~ 16405126 (-) True G52951
TU66358 other upstream 380092 16613224 ~ 16614461 (-) True G53017
TU66472 other upstream 619897 16853029 ~ 16913299 (-) False AMCG00008989
TU66702 other upstream 1503457 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 1635254 17868386 ~ 17868696 (-) True G53355

Expression Profile