RNA id: AMCG00008979



Basic Information


Item Value
RNA id AMCG00008979
length 1097
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00008979
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16561022 ~ 16564235 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GACCAGGAagcagcagtgagagagagagagagagagagagagagagagagagagagagagagagagagtttaaaaAGGGGACAAGGGAACAGACCTTCTTGACTTGGCCACTGACCCTGTGGGAGAAAAGGGGAAGAAGAGTTAGAGTGAGAgtgaggtgagagagagaaaacgtGAAGGAAAATAACAGAGAGGAAGTAGAAAAAGAGATAAgaaaaggaggaagaagagaggaCAGAATATGGAATCTACACACTTGGAACTACTGAACTCTACAGGGGTGTCAGACAGTCCAGACACTGGACTCTTCTCTCTGTACTCTGAATCCACACACAgtgGATGGGGGGATAGTCTCCAATTTCTTACTCTCAGCAGTGTTGAGATGGATCCTCATCTGATGCACCAATCGTACACCTATTGCCCTGTGTTGCATGGCAACCAGCAAACTCCCGCCCCCTCTGAGGGTGAGGAACTGATGACCGTTAACAGTACTGCCCTCAAGATTTCTGACAGCGAATCAGATGAAAGAATATCCTATGGGGCAGAGCCAAACTTTAGTGGGGccaccacctctcctccctcccctccgcCTCCTCGCCGCCGTTCTCGTTGCCGCCTCTACCAGTTTCTGCTGGCCCTACTGGCCTCGGGGGCGATGTCCCAGAGTGTGTGGTGGCTGGACCGGGACAGGGGCGTCTTCCAGTTCTCATCTGTCCACAAGGAGGCAGTGGCAAGGCGGTGGGGTCAACACAAGGGCAACCGTACCCCCATGAGCTACCAGAAGATGGCACGAGCACTCCGGGGCTACAGGGTCAGCGGCCAAGTCAGAAAGGTCAAGAGGAAGCTGGCCTACCAGTTCAGCCCCGCCGTGCTCCAGACACTGAGCAACTGACTGCTCTGTCAGAGGGTTAACTGGTCCTGTCCTGACCTGTAACCTGTCCTGTCATGCCCTGTAACCTCAGTATCCTGGAGTTTATGTCTTGTGTGAAACATCTGAGTTTTCATTAtggttttttaaattaaattatttgtactgcctttcttttttttttttggtatgctataataaaatattctgaattTCTACTCTCAATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66276 lncRNA upstream 164541 16396280 ~ 16396481 (+) True G52946
TU66275 lncRNA upstream 191608 16369172 ~ 16369414 (+) True G52945
TU66263 lncRNA upstream 216344 16344256 ~ 16344678 (+) True G52933
TU66261 lncRNA upstream 216946 16343016 ~ 16344076 (+) True G52931
TU66218 lncRNA upstream 241170 16311392 ~ 16319852 (+) True G52896
TU66368 lncRNA downstream 89958 16654193 ~ 16654923 (+) True G53025
TU66382 lncRNA downstream 115590 16679825 ~ 16683932 (+) False AMCG00008985
TU66396 lncRNA downstream 167154 16731389 ~ 16737398 (+) True AMCG00008988
TU66402 lncRNA downstream 182452 16746687 ~ 16750798 (+) True AMCG00008986
TU66419 lncRNA downstream 271377 16835612 ~ 16858245 (+) True G53069
AMCG00008981 mRNA upstream 2064 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008978 mRNA upstream 109771 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008972 mRNA upstream 426962 16126141 ~ 16134060 (+) True AMCG00008972
AMCG00008969 mRNA upstream 506497 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008970 mRNA upstream 568472 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008983 mRNA downstream 15628 16579863 ~ 16587381 (+) True AMCG00008983
AMCG00008982 mRNA downstream 35425 16599660 ~ 16602244 (+) True AMCG00008982
AMCG00008984 mRNA downstream 95757 16659992 ~ 16671430 (+) True AMCG00008984
AMCG00008985 mRNA downstream 119481 16683716 ~ 16726295 (+) True AMCG00008985
AMCG00008988 mRNA downstream 172511 16736746 ~ 16737499 (+) False AMCG00008988
TU66272 other upstream 198511 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 697368 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1751736 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1766050 14792169 ~ 14794972 (+) False AMCG00008920
TU66345 other downstream 15628 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 108268 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 766657 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1165131 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 1353431 17917666 ~ 17920053 (+) False AMCG00009009

Expression Profile