RNA id: TU66345


Basic Information

Item Value
RNA id TU66345
length 2293
RNA type TUCP
GC content 0.59
exon number 5
gene id AMCG00008983
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16579863 ~ 16587381 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGAGGCTGTTGGAACCGATTGGACCGCACCtacaggacacacacacccggtaTCGACCTAGTATTGGTATCGTGTTCGGATCAGTTCTGCTATAATACAGACTACAGTGTTGGGGATCACAGGGTCTGCGAGggGGGATGCAGGCAGTGGGAGACCTGTGTCTGaaacaggacaatgacctgCTCTtCTGTGAGCAGTGTCAGCTCTACTTCCGTGATTCCTGCCCCCGGCATGGGCTCCCACACTTCATCCACGATTCCCCTgctgaaggagagagggagcagggcagggggcggaggagagagagagcagcagtaATAGGAGTGGtagggggaggaggaggtggagttAGTCGAGCTGTTCTGTCACTGCCAACAGGCCTGggcctcagagagagagaaggaggagcagagggcagtgtgggGGTATTTTGTTGCCACCCCTCTCTGCCCCCAGGCGTAATTTTTGGACCTTACCAAGGAGAGATACTCTTACACAGGAAGGACTGCACAGTCTTCTCCTGGGCGATTAAGGAGAATGGGACGTACTTCTATGTTGACGCCTCGGACGAGAACAGCTCTAACTGGATGAGgtttgTGGCTTGTGCCTCGACGGAGGAGGAGCACAACCTCACTGTGTTCCAGTATAGGGGGCGGATCTACTACCGCACCAACCGACCAATCACAGCTGGTCAGGAGCTGAGGGTGTGGCTAGGGGAGGAATACGCCCACACACTGGGGCTCAGACTGGgtaagagggggagggagagaaagaggaaaggGGAGGTAGTATAGATGCTGACtgacactcactctctctctctcaggtgaaCACTTCAAGTACGAGTTTGGTGAGAAGGAGCTCCTGATGCAGCTCTTCCAGGACCTGCAGGCTGGTCCCTCCCCCCACCCAATCACCAACAGCAGGTCAACTGTCGCAACCTCCATCGTCATCAGCAACATCTGTAGCCAGGGCTGCTGGGATGCTGCCCCTGGGGGCCAGAGGGTGGAGGGTGGCcagcaagagggagagagagagggagcaggagagaaGCAAAGAGACGcacagagggacagggagagagactgggaggacagagacaggagagagagggatggagacaGGGATGGCAGGAGCAGACTCTCCCTCCCGTctacccccaccaccaccaccaacaccatccccctcctccccccgtCTGCCCTACCCGGTGGCCACAGGAAAAGCAGCTACGGTGGCCCAACACAGTGTCAAGCCTCCACCACCTTCAGCACCACTCAGAAAGCACCCTACATCACTCGGGAGCATGGAGGCGCGATAGGAGGGGGGTACAAGTTCGCAGAGGGCACCCAGAATCTGGTGAGCCTGGGCCGGGCTCAGAGTCGGTACTGGACCTTCTTTGGGTTCCAGGGTGACTCATTCGGACGCATCTTGGACAAGTCCAAGATCATCTGCAAGCTGTGCACCGTGCGTCTCTCCTACAGCGGCAACACCACCAACCTGCGCCAGCACCTCATCTACAAGCACCGTGCCGAGTACAACCGGCTGGTGGGGGCCGCCTCCTCACTGCCCCTGCCCCCCAAACTGGACTTCCTGATGGGGGCTCAGCCACAGGGTCAAGGTCAGGGTCAGGGATCAGTTGTCAGCGTGCCATCTCCTGTTGTGTGCGTGGCTGAGGATGCTCTCCCTGGGGCgcggagtgggagtgggagtagGCACTCTCAGAATATTGGCTCAGAACGTGTGGGAGCTGCCACGCTCTCCTACCCCGTTCCCGTCCCAGTCCCTTCTCGGGTAGTCTTGCCCCCCGTCGCACACGGTCTGTCCTCAGCCCGGACTACCTGCGCCATCGCTAACTTCCTAGTCTGTGACCTTTTGCCCCCAGAGACGGTAGAAGGGGAGGGCTTCCTGTCTCTGCTGTCCACCCTACAGCCAGCCTACAGGGTCCCCCATGCCCACTTCCTGTCCCGGAGCATGCTGAGGCAGGCCTACAGGAAGGGGAGGGAACACTGGGCTGGGCTGCTGCATGAGGTGAAGACAAGGGGTATGCTCACTGGTCCCCCATTCCGTCCTTCCCAGCTCCCTGACTGCACTAGCCTGAAGGGGAAGCAGCAACATCAGGCAAATCGGGATCCAACGGCTGACGCCAAAGTCAAACACTGCTATTCCTCCTCCGGGGCTTTGGCTGACATTCTCTCTCCTGCCCCAACTCcgtcttcttcctcctcctcatcccccccacccccccagatCCAGGTGGAGGAGCCTGTGGTGTCTGTGAGTGGGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66276 lncRNA upstream 183382 16396280 ~ 16396481 (+) True G52946
TU66275 lncRNA upstream 210449 16369172 ~ 16369414 (+) True G52945
TU66263 lncRNA upstream 235185 16344256 ~ 16344678 (+) True G52933
TU66261 lncRNA upstream 235787 16343016 ~ 16344076 (+) True G52931
TU66218 lncRNA upstream 260011 16311392 ~ 16319852 (+) True G52896
TU66368 lncRNA downstream 70264 16654193 ~ 16654923 (+) True G53025
TU66382 lncRNA downstream 95896 16679825 ~ 16683932 (+) False AMCG00008985
TU66396 lncRNA downstream 147460 16731389 ~ 16737398 (+) True AMCG00008988
TU66402 lncRNA downstream 162758 16746687 ~ 16750798 (+) True AMCG00008986
TU66419 lncRNA downstream 251683 16835612 ~ 16858245 (+) True G53069
AMCG00008979 mRNA upstream 15628 16561022 ~ 16564235 (+) True AMCG00008979
AMCG00008981 mRNA upstream 20905 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008978 mRNA upstream 128612 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008972 mRNA upstream 445803 16126141 ~ 16134060 (+) True AMCG00008972
AMCG00008969 mRNA upstream 525338 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008982 mRNA downstream 15731 16599660 ~ 16602244 (+) True AMCG00008982
AMCG00008984 mRNA downstream 76063 16659992 ~ 16671430 (+) True AMCG00008984
AMCG00008985 mRNA downstream 99787 16683716 ~ 16726295 (+) True AMCG00008985
AMCG00008988 mRNA downstream 152817 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008986 mRNA downstream 162758 16746687 ~ 16748393 (+) False AMCG00008986
TU66272 other upstream 217352 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 716209 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1770577 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1784891 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1784891 14792344 ~ 14794972 (+) False AMCG00008920
TU66371 other downstream 88574 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 746963 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1145437 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 1333737 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1966843 18550772 ~ 18553960 (+) True G53520

Expression Profile