RNA id: AMCG00008985


Basic Information

Item Value
RNA id AMCG00008985
length 2205
RNA type mRNA
GC content 0.59
exon number 12
gene id AMCG00008985
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16679825 ~ 16726295 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCTGAGCCCCCTCTCCAGTGACGAGGAGCAGCAGAGCATGCTGGGAAGGTACCGGGAGGAAGAGGtagaagacgaagaagaagaaatagaagaagaaagtgaaggaggaagagaaagaggacaaggagagggagaggaaggggatAATCTTGGGAGAAGAAGAgcgagaggaggagggggagggggagggggagcagaGACAGGAAGCGAAGGatcagaagaggaggaggaagaggagggggaagaagaggaagaggaagaagaggaggagggaggggacGAGGAAGTGGACGGAGACCAaggcagagagggggaggggctacACGGCAGCCAACCAGGTggcaggaggagggaggggcCAGGCATGATTGGACGGCTTGCTCCAACAGTAGCTGGGGGCAATCGGGTGCCCAGCAACCCAGGACACTACAGCAAACACAACCCTAGCCACGGgcacaacaccaacaccaacccTGCTGGACAAGGAAGTGGCCCCAACTCCTCATCTTCCTCCATGGCAGGGAGGGGCCGGCTGAGGGAGAGGAGCCACAGCTCTGCCCCTCCCCCTGCTGATGCACAAATTAACATGATGGTATTCCGCATCGGCATTCCAGACATCAAGCAAACGAAGTGTCTGCGGTTTAACCCAGATGCCTCAGTGTGGTGTGCAAAGCGGCAAGTGCTGTGCTCGCTAACTGAGAGCCTGCAGGATGTCCTCAACTATGGTCTGTTCCAGCCTGCCAGCGATGGGCGGCATGCCATGTTCCTGCAGGAGGAGCGGCTGCTCAGGGACTACCCACAGTCCTTCGAGCGAGGGGTGCCATACCTGGAGTTCCGCTATAAGACACGAGTTTACAAACAGACCAACCTGGATGAGAAGCAGCTGGCCAAACTGCACACCAAGgccagTCTGAAGAAGTTTATTGACTATGTCCATAGTGCGCACATCGACTTCCGCTCCCGTGATGGCCTGACCCCCTTGCACAAGGCCGTGCGTGCCCACAACCACCCTGCGCTGCTGGCTCTGCTGGAGCTGGGTGCCTCTCCTAACTATAAGGATCGGCGTGGCCTGACCCCGCTGTACCACTCCGTGATGCTAGGGGGCGACACCTCATGCTGTGAGAGCCTGCTGTTCCACAGGGCTGCTCTGGGCGTGACGGACGAGAATGGCTGGGAGGAAACGCATCAGATCAGGGGTGAAGAGGAGTGTGGAATGCTGGAGATCCACGAGGTGGCTGTGATGTCAGGACACTTTGAACTGGGAGAGATCATTAAGAACCACAGAGATTCAGATGTAGtgccatTTCTGGAGTCTCCAAAGTACGTTCCCCAGCGCAGAGAGAGCGCTCGAACCCTGACCCTGCCCCACCCCCTCCTGCGGGCCAACAGCGACAACAGCATGGTGGTGCCGGACTGGATGGCAGTGACTGGACCACAGACTGGACTCAATATCGTCTCTGTGCAGggTTATAAGCCCTCAGGTACGATGCGCAGCTCCAGCAGTCCCCGGGGGGCACGCAACCGGTCCCCGTCCCGAGGGAGGGGGGTCCCAGAAGAGGGGAGGAAACAAACGAGAGGACGACAGGGGCACAATATCTACTGGGAACCAATATGCAGCATGTCCAGCTGCAACAACTCACCAATACAGACCCATGCTGGATCTGGTCTGTCCAATATAGTTTACACTGAGATCCGGACCCTGCCTGcatctccccacccccccagggCCAGGCTGACCAGGGAGCGCAGGACAGGGGATCTCACTGCCAGCTTGGTGTGGGGGCAGCTGGGTGCGGTTTCAGGCCAGGGGAGCAGACCGAGCATCTCCACGCGGTTCTGCAGGAGGTCTGTCTCGGGCTTGGCCAGTTCTTCCCAGAGCAGGGGAAGGTTGGAAGGCTGGTTCCAGAGGGGCATCCCAGTTCTGCTTCTCCCAGTGGGTCAGGTGCCAGGGGGGCCAGGAGGAGCCACAAGTCAGATTCTGCTGGGCCTGACAGACTGGGCTGCCCTGGGGGGGAAAGGAGGAGTGGGAGTCACCGATCCATCAAACTCCTGGGGGTGGAGACAGTGCTGCAGATTGAGGAGTGGGAAGATCACTGTCCCACTGAGTACTCTGGGgacaggaggggaggggggaagagagagcaagggagagagtgagagagacggGTATcgagagggaagaggagagagacagagatag

Function

GO: NA

KEGG:

id description
K15009 SHANK; SH3 and multiple ankyrin repeat domains protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66368 lncRNA upstream 28793 16654193 ~ 16654923 (+) True G53025
TU66276 lncRNA upstream 287235 16396280 ~ 16396481 (+) True G52946
TU66275 lncRNA upstream 314302 16369172 ~ 16369414 (+) True G52945
TU66263 lncRNA upstream 339038 16344256 ~ 16344678 (+) True G52933
TU66261 lncRNA upstream 339640 16343016 ~ 16344076 (+) True G52931
TU66396 lncRNA downstream 5094 16731389 ~ 16737398 (+) True AMCG00008988
TU66402 lncRNA downstream 20392 16746687 ~ 16750798 (+) True AMCG00008986
TU66419 lncRNA downstream 109317 16835612 ~ 16858245 (+) True G53069
TU66480 lncRNA downstream 232218 16958513 ~ 16959031 (+) True G53115
TU66499 lncRNA downstream 283227 17009522 ~ 17009721 (+) True G53128
AMCG00008984 mRNA upstream 12286 16659992 ~ 16671430 (+) True AMCG00008984
AMCG00008982 mRNA upstream 81472 16599660 ~ 16602244 (+) True AMCG00008982
AMCG00008983 mRNA upstream 96335 16579863 ~ 16587381 (+) True AMCG00008983
AMCG00008979 mRNA upstream 119481 16561022 ~ 16564235 (+) True AMCG00008979
AMCG00008981 mRNA upstream 124758 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008988 mRNA downstream 10451 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008986 mRNA downstream 20392 16746687 ~ 16748393 (+) False AMCG00008986
AMCG00008991 mRNA downstream 71779 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00008990 mRNA downstream 73304 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00008993 mRNA downstream 434790 17161085 ~ 17161541 (+) True AMCG00008993
TU66371 other upstream 10174 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 99787 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 321205 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 820062 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1874430 14807297 ~ 14809286 (+) False AMCG00008919
TU66558 other downstream 604597 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1003071 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 1191371 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1824477 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 4441936 21168231 ~ 21168575 (+) True G53911

Expression Profile