RNA id: TU66402


Basic Information

Item Value
RNA id TU66402
length 3119
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00008986
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16746687 ~ 16750798 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACCCCCTTCCAAGCCCTTTGCCTCCAAGCCCCTCCCCTACTGGACCAAATTTGACGttgctgattggctgagctaCTTGAACCTGGGCGAGCACCGTGACCGTTTCCTCGACAATGAGATTGACGGCACTCACCTGCCCTCCCTGACCAAGGAGGACTACCTGGACCTGGGAGTGACCCGTGTGGGCCATCGCATGAACATAGAAAGGGCCCTCAGGCGAGTGatggacagGCTGTCAACTCCATTCCCAGTGTCTGCCCTTTCTCCTCGGGAGGGACGgatggagagaaggagggatGAGGGCACTCATAGCtgaggagtgagagagagacacatactctcacacaaacatactcacgcacacacacacacacaaagacatactcacacagacacacacttacacacacacagttagacAGACAAATTTCTGCACACCTCCCTTCCTCTTTTACAGACAGATTGACTGAGAGatagggagagacagagagagagagaggtagggagagagggagggagggacaatATTTTGATAGACACCTACAGAACTCTCAGTTGAGTTGTGGAACCCCGTCGCCACAGTGAAATTTCCCCCATGCAACTGACCCCCGTCTGCATGGAAACCACTCATCAGTATTCATATAATATCACTGCCCCTTTCCCCAGCTCCCCCTTTACTCCAGCAGAGAGAATTCGGGGTAGGAGGAAGATGGACACAGTACTCTACCAAGATGGCCAACTTTTGGTGGCGGGGGGGTTGTTTGGAGAGACGTCCTAACACGCAAGCCCCCTATGCGCAGCAGTACAACACTGTAACTTGGCAAAATACTGCACCTGCAACAGACTCTACcaacagagaaaaaaagagaggaagggagagatggagagagaggaggactgTCTCACAAGGATGAACAATGGGATATTAACCTTATGCTCCCCCCCACGCCCCCATCCCGACATCCCAGCTGACATACTCTCCTCCTCATCATCACTCCATCCCCAAGCTTCTGGAAGAGGGGAATGAGGAAGCAGAGGGAGTGCAGTGGAGGGATGGATAGACAATTAACTAACACTGCCCTTCCTTATTAGCGGACGCTCATTAACATTAAGACTGGATTTTCAGCTTGGACAGAAGTGGGTCGGCTGTGATGCTCTTACAGCTATTAACAATGATGaagaatattattaatactacaaCTGTGAGCTACAGTTCTCCTGTGTGCCTGAACAGAGAGAGGGGCGCTGTTTcccactgtattattattattattattattattatcatcatcattattatgaccaatattattattagtgacaGTGAGCTACAGTTCCTATGTGTGCCTGAACAGAGATAAGGGGCGCTGTTTaccactgtattattattattattattattattattattattgagtgaGCTGCAGTTCTCATGTGTGCCTGAATATAGCTGTGGGCGCTGTTTCTCTCACTTAATCATCATTACTATGAATCAGATTCTTATTTTAAGTCAATGTagtgtacatatatgtatatagttgaTGTGTGTGCgcctgcgtgtgtgtatatatgcataattTGGGATATTTTCTGTGATGTTTGGACCCCAAAAGGGTAGACCTGACAGGCTTTAACAAGATAGCAATTacactttgaaacaatgtattgcaATATAAACTGAGCATGCAAGACAGACAGATGCTATACAgatctgagagagagtgagagtgagagagtttAATTATGTAGCTTTATTCTGTAGTTCACAGCTACAAATATGATCATGACAGACAGAATGAGACAGAGAAACTGAGGGATAGatagatggagaaagagagaaagacagacagagaacgGTATCTGGAACTCAACACTgccccccatctccctctccctctattttgctctctctgtctcttttgcAGTAATTGTATAATAAAGGGCTTTCtctatatctgtatatctgtcaatctatctatatatctatctatctatctatctatctatctatctatctatctatagatCTATCTACCTCTTTGGCTGATAACAAGGTCTACTcaatctctctccccctttccccctctctctcgctctttaaCAAAGAAATGGAGTAAGTGagtttatctgtctgtctgcctgagtGTCAATGTATACTTTATCTATAATACATACGGGACagacatacacactcacactctcacacacaatgacacacacacacacacacgcaggcagACACATACACAAGATTATTGGATTATAATTTTGatgaatgtatttgtatatagagctacataataataataatcataataatgatgatgatgatgatgataaagatGATGGTGAAGATAGAGGTGTAATATTTTCAAAGTTCTGCAGAATCTTTGTCTTCCAAACATGATGttataaagaattaaaataataatgataaaatattaatgtttgttatttaaaaaaatatttacaaaaagataaaaaatattacaattcatGAACAAATTTGATTCTAAAACGATGTGCTGTATCACTGCGTctttgcctctctctccctctctctgtcaatctctctgtctcagtgtggCAGGAGAGAGAgagagaaagaagagTGAGAgtagagacagagatgcagaATAATTGTTAGaatcaataatttatttcttttaaaaatgaataaataaatatactatgATATAATACATGAAGACtttgaacaaatatatttaatgagataaaaaaaaataatttcagatgTTACACATATGATTTGAATTTCAATATATAGAAGGGTATGTacgtatatgtatgtatgtatattgtagGATAACTGTTTTCAGCTGAGGTACATGAATGGGGATTTAAACTGCATCATAATTCTAGCTGATGTTCTCAGAAATAAACAGTAATATTCTGGATTAgtgtctgtgtctccctctctctcgctctctctctgacagcagCATTCTCTATCTGAGTCACTCTCATTCTCTCTGTGAGtgtctattctctctctctcaatttttctatttcattttaaggtgttttattggcatgactaacaAATTCTTAGTGTTGACAAAgcttttaaacattacatacatatgtagcgtaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66396 lncRNA upstream 9289 16731389 ~ 16737398 (+) True AMCG00008988
TU66382 lncRNA upstream 62755 16679825 ~ 16683932 (+) False AMCG00008985
TU66368 lncRNA upstream 91764 16654193 ~ 16654923 (+) True G53025
TU66276 lncRNA upstream 350206 16396280 ~ 16396481 (+) True G52946
TU66275 lncRNA upstream 377273 16369172 ~ 16369414 (+) True G52945
TU66419 lncRNA downstream 84814 16835612 ~ 16858245 (+) True G53069
TU66480 lncRNA downstream 207715 16958513 ~ 16959031 (+) True G53115
TU66499 lncRNA downstream 258724 17009522 ~ 17009721 (+) True G53128
TU66502 lncRNA downstream 268887 17019685 ~ 17019964 (+) True G53131
TU66508 lncRNA downstream 296216 17047014 ~ 17048098 (+) True G53137
AMCG00008988 mRNA upstream 9188 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008985 mRNA upstream 20392 16683716 ~ 16726295 (+) True AMCG00008985
AMCG00008984 mRNA upstream 75257 16659992 ~ 16671430 (+) True AMCG00008984
AMCG00008982 mRNA upstream 144443 16599660 ~ 16602244 (+) True AMCG00008982
AMCG00008983 mRNA upstream 159306 16579863 ~ 16587381 (+) True AMCG00008983
AMCG00008991 mRNA downstream 47276 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00008990 mRNA downstream 48801 16799599 ~ 16842718 (+) True AMCG00008990
AMCG00008993 mRNA downstream 410287 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008995 mRNA downstream 585922 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008996 mRNA downstream 672648 17423446 ~ 17453217 (+) True AMCG00008996
TU66371 other upstream 73145 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 162758 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 384176 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 883033 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1937401 14807297 ~ 14809286 (+) False AMCG00008919
TU66558 other downstream 580094 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 978568 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 1166868 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1799974 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 4417433 21168231 ~ 21168575 (+) True G53911

Expression Profile