RNA id: AMCG00008987


Basic Information

Item Value
RNA id AMCG00008987
length 630
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00008987
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16782779 ~ 16784022 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCCATCAGTCCTGCCACTGGTGACCCTGCCTGGGTCCGACTCTCTGCTGGACCGCACACAGGCCAAACTGACCCACAGGCTGCTGAAAAAGCTGGGGGCAGGGCTGGAGGTGCGAGTCAAAGGTCAGGGTGTGTGGGCAACCAGACGGGGGGACACCTGGGCCTACTGGAGCCTCAGCCAGCATGACCGGAGTTGTCGGCCCAGGGAGGTGCCCAAGGAGGGGCAGAAGGTCTACAGCATGGGGGAGTTCACTAAGGGGATGATCGACTTCATGGAGAAAGAAACCGGCTCTCCAGCCACCTCCCTCTGGTTCTGCCTGGGTGAGAAGTGGCCCGACCCAGAGAACAGACCCTgggagaaaaaactaattatgGTGGAgGTAACTCTGACCTCTCTGGAGATCCTGCATCAGCTGgctgtccagcagggggcatcaTCGCTGCACAGTGAGGAGGTGGAGCTGCAGGTGTCTGATAATCCCAGCCTGCTAAACTACCTCCTTCAATCTCTGGACAGTATGGATACCAGCTAGAGGGagggttgggggtggggtgagAGGATGATTGGGGAGAAAGAAGCAGAGCAGAGAATCAAGGAGagggcaaagagagagagagagagagag

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66457 lncRNA downstream 32162 16747851 ~ 16750617 (-) True G53096
TU66385 lncRNA downstream 53587 16673709 ~ 16729192 (-) True G53042
TU66334 lncRNA downstream 241224 16541268 ~ 16541555 (-) True G52999
TU66274 lncRNA downstream 419900 16362622 ~ 16362879 (-) True G52944
TU66268 lncRNA downstream 430479 16352012 ~ 16352300 (-) True G52938
TU66464 lncRNA upstream 49309 16833331 ~ 16837563 (-) True G53102
TU66498 lncRNA upstream 217988 17002010 ~ 17002218 (-) True G53127
TU66505 lncRNA upstream 256085 17040107 ~ 17040680 (-) True G53134
TU66513 lncRNA upstream 276786 17060808 ~ 17061551 (-) True G53142
TU66518 lncRNA upstream 297656 17081678 ~ 17082065 (-) True G53147
AMCG00008980 mRNA downstream 263213 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008975 mRNA downstream 444071 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008976 mRNA downstream 460148 16319368 ~ 16322631 (-) True AMCG00008976
AMCG00008977 mRNA downstream 484523 16293316 ~ 16298256 (-) True AMCG00008977
AMCG00008974 mRNA downstream 493407 16273804 ~ 16289372 (-) True AMCG00008974
AMCG00008989 mRNA upstream 39773 16823795 ~ 16864424 (-) True AMCG00008989
AMCG00008992 mRNA upstream 186210 16970232 ~ 16989426 (-) True AMCG00008992
AMCG00008994 mRNA upstream 421068 17205090 ~ 17220441 (-) True AMCG00008994
AMCG00008998 mRNA upstream 817810 17601832 ~ 17611358 (-) True AMCG00008998
AMCG00009000 mRNA upstream 831706 17615728 ~ 17626783 (-) True AMCG00009000
TU66358 other downstream 168318 16613224 ~ 16614461 (-) True G53017
TU66281 other downstream 377653 16404710 ~ 16405126 (-) True G52951
TU66179 other downstream 708844 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 819162 15957667 ~ 15963617 (-) True G52834
TU66061 other downstream 930970 15841664 ~ 15851809 (-) False AMCG00008964
TU66472 other upstream 69007 16853029 ~ 16913299 (-) False AMCG00008989
TU66702 other upstream 952567 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 1084364 17868386 ~ 17868696 (-) True G53355
TU67292 other upstream 3416725 20200747 ~ 20264085 (-) True G53809
TU67291 other upstream 3468882 20252904 ~ 20264085 (-) False G53809

Expression Profile