RNA id: AMCG00008990



Basic Information


Item Value
RNA id AMCG00008990
length 966
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00008990
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16799599 ~ 16842718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTGCCGGAGGTGGCGAACAAAGGGGCACACCGCAATCTCCGAAGCCGGCAACAGCAAGCGACAGGCCGCCGTACCCGCCCACAGGGATCCCCTGCGCCATCGGCAGAGGACAGCCCTGCTGCCGAGCCAGAGGAGATGGGAGAACTGGACACTGCTTCCCCTACGGCGGATAGGTCTACCATGCTGCTGCTTcgtgtttttgttgtaattgaTGAAATAAGACGTTTCACTCTTGAGAGTTTGCCAGAGACAGTGGAAGACCTCTACTCAACACTAAGGACCACGCGTGGCTTGCAAGGTGACTTTGTTCTACAATATGAAGACCCAGACTTTGGGAAAGAGCTGTGCAACTTGACCAACATCTCAAATCTTCCTAAAGAGAAAGCAACCCTTAAGAACTCAAACCAGAACAGACGAGCAGCTGTCCTTCTTGGCCTGCTGTACTACCTCGGTGAAAATCCTTCCAACTTTGTCAAGATATGTGAGGCATGGGCAGAGGTCAGTGGGCTTTTCCGGAAGGGTGTCACCCAGCCTGACCCTTCTGTGTGGAAGCGGAATTTCCGCTGCGCCCTGAAGTCCAAGGGAACTCTGCTAAAGTTGGAGGACTTTGGAGAGGATGCCCATAGCTTCAATGAGCACATTAAAGTTTTAATTTTCATCCCCTACACTTACAGCGAAGATACAGTCactgtgaaaGTTTCGTTTTCGTCTTTTTCTGTCACGGCTCACAGGGGTCCGCCCCCTCTACGTCTCGTTTGGTCACCGGACACACTGGCGGGAGTCCTGCGGTCTTTCCATCATTCCCCCCCCAGCCGCACCCTTACTGCCCCTGAGTCCAGAGGGTCTGCAGACATCTGGGGGAATGAGTGCAGAGCCTCCTGCGAGAGATGGATGGAGAAAGTGTCCTCCAGGGCCTGGATCATGTCTGGGTCCAGCGCTGTGCTGACCAACATTTCCACATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66402 lncRNA upstream 48801 16746687 ~ 16750798 (+) True AMCG00008986
TU66396 lncRNA upstream 62201 16731389 ~ 16737398 (+) True AMCG00008988
TU66382 lncRNA upstream 115667 16679825 ~ 16683932 (+) False AMCG00008985
TU66368 lncRNA upstream 144676 16654193 ~ 16654923 (+) True G53025
TU66276 lncRNA upstream 403118 16396280 ~ 16396481 (+) True G52946
TU66480 lncRNA downstream 115795 16958513 ~ 16959031 (+) True G53115
TU66499 lncRNA downstream 166804 17009522 ~ 17009721 (+) True G53128
TU66502 lncRNA downstream 176967 17019685 ~ 17019964 (+) True G53131
TU66508 lncRNA downstream 204296 17047014 ~ 17048098 (+) True G53137
TU66510 lncRNA downstream 208755 17051473 ~ 17051675 (+) True G53139
AMCG00008991 mRNA upstream 1070 16798074 ~ 16798529 (+) True AMCG00008991
AMCG00008986 mRNA upstream 51206 16746687 ~ 16748393 (+) False AMCG00008986
AMCG00008988 mRNA upstream 62100 16736746 ~ 16737499 (+) False AMCG00008988
AMCG00008985 mRNA upstream 73304 16683716 ~ 16726295 (+) True AMCG00008985
AMCG00008984 mRNA upstream 128169 16659992 ~ 16671430 (+) True AMCG00008984
AMCG00008993 mRNA downstream 318367 17161085 ~ 17161541 (+) True AMCG00008993
AMCG00008995 mRNA downstream 494002 17336720 ~ 17343676 (+) False AMCG00008995
AMCG00008996 mRNA downstream 580728 17423446 ~ 17453217 (+) True AMCG00008996
AMCG00008997 mRNA downstream 649763 17492481 ~ 17601018 (+) True AMCG00008997
AMCG00009003 mRNA downstream 945802 17788520 ~ 17796297 (+) True AMCG00009003
TU66371 other upstream 126057 16672503 ~ 16673542 (+) True G53028
TU66345 other upstream 215670 16579863 ~ 16583929 (+) False AMCG00008983
TU66272 other upstream 437088 16362102 ~ 16362511 (+) True G52942
TU66074 other upstream 935945 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1990313 14807297 ~ 14809286 (+) False AMCG00008919
TU66558 other downstream 488174 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 886648 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 1074948 17917666 ~ 17920053 (+) False AMCG00009009
TU66948 other downstream 1708054 18550772 ~ 18553960 (+) True G53520
TU67402 other downstream 4325513 21168231 ~ 21168575 (+) True G53911

Expression Profile